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#include <elxMultiBSplineTransformWithNormal.h>
A transform based on the itkMultiBSplineDeformableTransformWithNormal.
This transform is a composition of B-spline transformations, allowing sliding motion between different labels.
The parameters used in this class are:
Transform: Select this transform as follows:
(Transform "MultiBSplineTransformWithNormal")
BSplineTransformSplineOrder: choose a B-spline order 1,2, or 3.
example: (BSplineTransformSplineOrder 3)
Default value: 3 (cubic B-splines).
FinalGridSpacingInVoxels: the grid spacing of the B-spline transform for each dimension.
example: (FinalGridSpacingInVoxels 8.0 8.0 8.0)
If only one argument is given, that factor is used for each dimension. The spacing is not in millimeters, but in "voxel size units". The default is 16.0 in every dimension.
FinalGridSpacingInPhysicalUnits: the grid spacing of the B-spline transform for each dimension.
example: (FinalGridSpacingInPhysicalUnits 8.0 8.0 8.0)
If only one argument is given, that factor is used for each dimension. The spacing is specified in millimeters. If not specified, the FinalGridSpacingInVoxels is used, or the FinalGridSpacing, to compute a FinalGridSpacingInPhysicalUnits. If those are not specified, the default value for FinalGridSpacingInVoxels is used to compute a FinalGridSpacingInPhysicalUnits.
GridSpacingSchedule: the grid spacing downsampling factors for the B-spline transform for each dimension and each resolution.
example: (GridSpacingSchedule 4.0 4.0 2.0 2.0 1.0 1.0)
Which is an example for a 2D image, using 3 resolutions.
For convenience, you may also specify only one value for each resolution:
example: (GridSpacingSchedule 4.0 2.0 1.0 )
which is equivalent to the example above.
The transform parameters necessary for transformix, additionally defined by this class, are:
GridSize: stores the size of the B-spline grid.
example: (GridSize 16 16 16)
GridIndex: stores the index of the B-spline grid.
example: (GridIndex 0 0 0)
GridSpacing: stores the spacing of the B-spline grid.
example: (GridSpacing 16.0 16.0 16.0)
GridOrigin: stores the origin of the B-spline grid.
example: (GridOrigin 0.0 0.0 0.0)
GridDirection: stores the direction cosines of the B-spline grid.
example: (GridDirection 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.1)
BSplineTransformSplineOrder: stores the B-spline order 1,2, or 3.
example: (BSplineTransformSplineOrder 3)
Default value: 3 (cubic B-splines).
Definition at line 88 of file elxMultiBSplineTransformWithNormal.h.
Static Public Member Functions | |
static Pointer | New () |
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static Pointer | New () |
Private Member Functions | |
unsigned int | InitializeBSplineTransform () |
MultiBSplineTransformWithNormal (const Self &) | |
void | operator= (const Self &) |
typedef BSplineTransformBaseType::Pointer elastix::MultiBSplineTransformWithNormal< TElastix >::BSplineTransformBasePointer |
Definition at line 128 of file elxMultiBSplineTransformWithNormal.h.
typedef itk::AdvancedBSplineDeformableTransformBase< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( SpaceDimension ) > elastix::MultiBSplineTransformWithNormal< TElastix >::BSplineTransformBaseType |
The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform.
Definition at line 127 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass2::CombinationTransformType elastix::MultiBSplineTransformWithNormal< TElastix >::CombinationTransformType |
Definition at line 184 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass2::ConfigurationPointer elastix::MultiBSplineTransformWithNormal< TElastix >::ConfigurationPointer |
Definition at line 177 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass2::ConfigurationType elastix::MultiBSplineTransformWithNormal< TElastix >::ConfigurationType |
Definition at line 176 of file elxMultiBSplineTransformWithNormal.h.
typedef itk::SmartPointer< const Self > elastix::MultiBSplineTransformWithNormal< TElastix >::ConstPointer |
Definition at line 105 of file elxMultiBSplineTransformWithNormal.h.
typedef BSplineTransformBaseType::ContinuousIndexType elastix::MultiBSplineTransformWithNormal< TElastix >::ContinuousIndexType |
Definition at line 169 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass2::CoordRepType elastix::MultiBSplineTransformWithNormal< TElastix >::CoordRepType |
Definition at line 180 of file elxMultiBSplineTransformWithNormal.h.
typedef BSplineTransformBaseType::DirectionType elastix::MultiBSplineTransformWithNormal< TElastix >::DirectionType |
Definition at line 167 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass2::ElastixPointer elastix::MultiBSplineTransformWithNormal< TElastix >::ElastixPointer |
Definition at line 175 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass2::ElastixType elastix::MultiBSplineTransformWithNormal< TElastix >::ElastixType |
Typedef's from TransformBase.
Definition at line 174 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass2::FixedImageType elastix::MultiBSplineTransformWithNormal< TElastix >::FixedImageType |
Definition at line 181 of file elxMultiBSplineTransformWithNormal.h.
typedef GridScheduleComputerType::Pointer elastix::MultiBSplineTransformWithNormal< TElastix >::GridScheduleComputerPointer |
Definition at line 189 of file elxMultiBSplineTransformWithNormal.h.
typedef itk::GridScheduleComputer< CoordRepType, SpaceDimension > elastix::MultiBSplineTransformWithNormal< TElastix >::GridScheduleComputerType |
Typedef's for the GridScheduleComputer and the UpsampleBSplineParametersFilter.
Definition at line 188 of file elxMultiBSplineTransformWithNormal.h.
typedef GridScheduleComputerType ::VectorGridSpacingFactorType elastix::MultiBSplineTransformWithNormal< TElastix >::GridScheduleType |
Definition at line 191 of file elxMultiBSplineTransformWithNormal.h.
typedef GridUpsamplerType::Pointer elastix::MultiBSplineTransformWithNormal< TElastix >::GridUpsamplerPointer |
Definition at line 194 of file elxMultiBSplineTransformWithNormal.h.
typedef itk::UpsampleBSplineParametersFilter< ParametersType, ImageType > elastix::MultiBSplineTransformWithNormal< TElastix >::GridUpsamplerType |
Definition at line 193 of file elxMultiBSplineTransformWithNormal.h.
typedef ImageLabelType::Pointer elastix::MultiBSplineTransformWithNormal< TElastix >::ImageLabelPointer |
Definition at line 199 of file elxMultiBSplineTransformWithNormal.h.
typedef itk::Image< unsigned char, itkGetStaticConstMacro( SpaceDimension ) > elastix::MultiBSplineTransformWithNormal< TElastix >::ImageLabelType |
Typdef's for the Image of Labels
Definition at line 198 of file elxMultiBSplineTransformWithNormal.h.
typedef BSplineTransformBaseType::ImagePointer elastix::MultiBSplineTransformWithNormal< TElastix >::ImagePointer |
Definition at line 161 of file elxMultiBSplineTransformWithNormal.h.
typedef BSplineTransformBaseType::ImageType elastix::MultiBSplineTransformWithNormal< TElastix >::ImageType |
Definition at line 160 of file elxMultiBSplineTransformWithNormal.h.
typedef BSplineTransformBaseType::IndexType elastix::MultiBSplineTransformWithNormal< TElastix >::IndexType |
Definition at line 163 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass1::InputCovariantVectorType elastix::MultiBSplineTransformWithNormal< TElastix >::InputCovariantVectorType |
Definition at line 151 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass1::InputPointType elastix::MultiBSplineTransformWithNormal< TElastix >::InputPointType |
Definition at line 155 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass1::InputVectorType elastix::MultiBSplineTransformWithNormal< TElastix >::InputVectorType |
Definition at line 149 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass1::InputVnlVectorType elastix::MultiBSplineTransformWithNormal< TElastix >::InputVnlVectorType |
Definition at line 153 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass2::ITKBaseType elastix::MultiBSplineTransformWithNormal< TElastix >::ITKBaseType |
Definition at line 183 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass1::JacobianType elastix::MultiBSplineTransformWithNormal< TElastix >::JacobianType |
Definition at line 148 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass2::MovingImageType elastix::MultiBSplineTransformWithNormal< TElastix >::MovingImageType |
Definition at line 182 of file elxMultiBSplineTransformWithNormal.h.
typedef itk::MultiBSplineDeformableTransformWithNormal< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( SpaceDimension ), 3 > elastix::MultiBSplineTransformWithNormal< TElastix >::MultiBSplineTransformWithNormalCubicType |
Definition at line 142 of file elxMultiBSplineTransformWithNormal.h.
typedef itk::MultiBSplineDeformableTransformWithNormal< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( SpaceDimension ), 1 > elastix::MultiBSplineTransformWithNormal< TElastix >::MultiBSplineTransformWithNormalLinearType |
Typedef for supported BSplineTransform types.
Definition at line 134 of file elxMultiBSplineTransformWithNormal.h.
typedef itk::MultiBSplineDeformableTransformWithNormal< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( SpaceDimension ), 2 > elastix::MultiBSplineTransformWithNormal< TElastix >::MultiBSplineTransformWithNormalQuadraticType |
Definition at line 138 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass1::NumberOfParametersType elastix::MultiBSplineTransformWithNormal< TElastix >::NumberOfParametersType |
Definition at line 147 of file elxMultiBSplineTransformWithNormal.h.
typedef BSplineTransformBaseType::OriginType elastix::MultiBSplineTransformWithNormal< TElastix >::OriginType |
Definition at line 166 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass1::OutputCovariantVectorType elastix::MultiBSplineTransformWithNormal< TElastix >::OutputCovariantVectorType |
Definition at line 152 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass1::OutputPointType elastix::MultiBSplineTransformWithNormal< TElastix >::OutputPointType |
Definition at line 156 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass1::OutputVectorType elastix::MultiBSplineTransformWithNormal< TElastix >::OutputVectorType |
Definition at line 150 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass1::OutputVnlVectorType elastix::MultiBSplineTransformWithNormal< TElastix >::OutputVnlVectorType |
Definition at line 154 of file elxMultiBSplineTransformWithNormal.h.
typedef BSplineTransformBaseType::ParameterIndexArrayType elastix::MultiBSplineTransformWithNormal< TElastix >::ParameterIndexArrayType |
Definition at line 171 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass1::ParametersType elastix::MultiBSplineTransformWithNormal< TElastix >::ParametersType |
Definition at line 146 of file elxMultiBSplineTransformWithNormal.h.
typedef BSplineTransformBaseType::PixelType elastix::MultiBSplineTransformWithNormal< TElastix >::PixelType |
Typedef's specific for the BSplineTransform.
Definition at line 159 of file elxMultiBSplineTransformWithNormal.h.
typedef itk::SmartPointer< Self > elastix::MultiBSplineTransformWithNormal< TElastix >::Pointer |
Definition at line 104 of file elxMultiBSplineTransformWithNormal.h.
typedef BSplineTransformBaseType::RegionType elastix::MultiBSplineTransformWithNormal< TElastix >::RegionType |
Definition at line 162 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass2::RegistrationPointer elastix::MultiBSplineTransformWithNormal< TElastix >::RegistrationPointer |
Definition at line 179 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass2::RegistrationType elastix::MultiBSplineTransformWithNormal< TElastix >::RegistrationType |
Definition at line 178 of file elxMultiBSplineTransformWithNormal.h.
typedef Superclass1::ScalarType elastix::MultiBSplineTransformWithNormal< TElastix >::ScalarType |
Typedefs inherited from the superclass.
Definition at line 145 of file elxMultiBSplineTransformWithNormal.h.
typedef MultiBSplineTransformWithNormal elastix::MultiBSplineTransformWithNormal< TElastix >::Self |
Standard ITK-stuff.
Definition at line 99 of file elxMultiBSplineTransformWithNormal.h.
typedef BSplineTransformBaseType::SizeType elastix::MultiBSplineTransformWithNormal< TElastix >::SizeType |
Definition at line 164 of file elxMultiBSplineTransformWithNormal.h.
typedef BSplineTransformBaseType::SpacingType elastix::MultiBSplineTransformWithNormal< TElastix >::SpacingType |
Definition at line 165 of file elxMultiBSplineTransformWithNormal.h.
typedef itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > elastix::MultiBSplineTransformWithNormal< TElastix >::Superclass1 |
Definition at line 102 of file elxMultiBSplineTransformWithNormal.h.
typedef elx::TransformBase< TElastix > elastix::MultiBSplineTransformWithNormal< TElastix >::Superclass2 |
Definition at line 103 of file elxMultiBSplineTransformWithNormal.h.
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The constructor.
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inlineprotectedvirtual |
The destructor.
Definition at line 255 of file elxMultiBSplineTransformWithNormal.h.
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private |
The private constructor.
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Execute stuff before anything else is done:
Reimplemented from elastix::BaseComponent.
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Execute stuff before each new pyramid resolution:
Reimplemented from elastix::BaseComponent.
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Execute stuff before the actual registration:
Reimplemented from elastix::BaseComponent.
elastix::MultiBSplineTransformWithNormal< TElastix >::elxClassNameMacro | ( | "MultiBSplineTransformWithNormal< TElastix >" | ) |
Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "BSplineTransform")
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Run-time type information (and related methods).
Reimplemented from elastix::TransformBase< TElastix >.
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Method to increase the density of the BSpline grid.
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Initialize the right BSplineTransfrom based on the spline order and periodicity.
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Method to set the initial BSpline grid and initialize the parameters (to 0).
elastix::MultiBSplineTransformWithNormal< TElastix >::itkStaticConstMacro | ( | SpaceDimension | , |
unsigned | int, | ||
Superclass2::FixedImageDimension | |||
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Dimension of the fixed image.
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Method for creation through the object factory.
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The private copy constructor.
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Read user-specified gridspacing and call the itkGridScheduleComputer.
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Function to read transform-parameters from a file.
Reimplemented from elastix::TransformBase< TElastix >.
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Set the scales of the edge B-spline coefficients to zero.
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Function to write transform-parameters to a file.
Reimplemented from elastix::TransformBase< TElastix >.
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Definition at line 269 of file elxMultiBSplineTransformWithNormal.h.
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Definition at line 270 of file elxMultiBSplineTransformWithNormal.h.
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Definition at line 271 of file elxMultiBSplineTransformWithNormal.h.
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Definition at line 272 of file elxMultiBSplineTransformWithNormal.h.
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Private variables.
Definition at line 268 of file elxMultiBSplineTransformWithNormal.h.
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Variable to remember order of MultiBSplineTransformWithNormal.
Definition at line 275 of file elxMultiBSplineTransformWithNormal.h.
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