18 #ifndef __elxMissingStructurePenalty_H__ 19 #define __elxMissingStructurePenalty_H__ 24 #include "itkMeshFileReader.h" 25 #include "itkMeshFileWriter.h" 53 template<
class TElastix >
57 typename MetricBase< TElastix >::FixedPointSetType,
58 typename MetricBase< TElastix >::MovingPointSetType >,
69 typedef itk::SmartPointer< Self >
Pointer;
141 FixedImageType::ImageDimension );
143 MovingImageType::ImageDimension );
155 virtual void Initialize(
void ) throw (
itk::ExceptionObject );
171 const
std::
string & meshFileName,
172 typename FixedMeshType::Pointer & mesh );
200 #ifndef ITK_MANUAL_INSTANTIATION 201 #include "elxMissingStructurePenalty.hxx" 204 #endif // end #ifndef __elxMissingStructurePenalty_H__ Superclass1::FixedMeshPointer FixedMeshPointer
Superclass::ElastixPointer ElastixPointer
Superclass::TransformPointer TransformPointer
Superclass::TransformJacobianType TransformJacobianType
itkStaticConstMacro(FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
Superclass::RegistrationType RegistrationType
Superclass2::ITKBaseType ITKBaseType
Superclass1::DerivativeType DerivativeType
Superclass1::FixedImageMaskType FixedImageMaskType
Superclass1::TransformJacobianType TransformJacobianType
virtual void BeforeRegistration(void)
Superclass::ConfigurationType ConfigurationType
Superclass1::ParametersType ParametersType
FixedMeshType::Pointer FixedMeshPointer
Superclass1::MappedMeshContainerType MappedMeshContainerType
Superclass1::FixedPointSetConstPointer FixedPointSetConstPointer
MovingImageMaskType::Pointer MovingImageMaskPointer
Superclass2::MovingImageType MovingImageType
VectorContainer< MeshIdType, FixedMeshPointer > MappedMeshContainerType
Mesh< DummyMeshPixelType, FixedPointSetDimension, MeshTraitsType > FixedMeshType
Superclass::DerivativeType DerivativeType
Superclass1::FixedImageMaskPointer FixedImageMaskPointer
itk::SmartPointer< Self > Pointer
itk::PointSet< CoordinateRepresentationType, FixedImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, FixedImageDimension, FixedImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > > FixedPointSetType
Superclass2::RegistrationType RegistrationType
Superclass1::MeasureType MeasureType
MetricBase< TElastix > Superclass2
itk::MissingVolumeMeshPenalty< typename MetricBase< TElastix >::FixedPointSetType, typename MetricBase< TElastix >::MovingPointSetType > Superclass1
Superclass::ParametersValueType CoordinateRepresentationType
virtual void Initialize(void)
Superclass::ParametersType ParametersType
itk::AdvancedCombinationTransform< CoordRepType, itkGetStaticConstMacro(FixedImageDimension) > CombinationTransformType
Superclass1::FixedPointSetType FixedPointSetType
ElastixType::FixedImageType FixedImageType
SpatialObject< itkGetStaticConstMacro(MovingPointSetDimension) > MovingImageMaskType
FixedPointSetType PointSetType
VectorContainer< MeshIdType, FixedMeshConstPointer > FixedMeshContainerType
Superclass1::FixedMeshConstPointer FixedMeshConstPointer
Superclass1::TransformType TransformType
MeshTraitsType::CellType::CellInterface CellInterfaceType
MappedMeshContainerType::Pointer MappedMeshContainerPointer
unsigned int m_NumberOfMeshes
Superclass1::OutputPointType OutputPointType
Superclass1::MeshIdType MeshIdType
MissingStructurePenalty()
Superclass1::MovingImageMaskType MovingImageMaskType
Superclass2::RegistrationPointer RegistrationPointer
virtual void SelectNewSamples(void)
FixedMeshContainerType::Pointer FixedMeshContainerPointer
Superclass1::FixedMeshContainerType FixedMeshContainerType
Superclass1::MovingImageMaskPointer MovingImageMaskPointer
CombinationTransformType::InitialTransformType InitialTransformType
MovingPointSetType::ConstPointer MovingPointSetConstPointer
unsigned int ReadMesh(const std::string &meshFileName, typename FixedMeshType::Pointer &mesh)
Superclass2::ElastixType ElastixType
SpatialObject< itkGetStaticConstMacro(FixedPointSetDimension) > FixedImageMaskType
virtual void AfterEachResolution(void)
Superclass::TransformParametersType TransformParametersType
Superclass2::ConfigurationPointer ConfigurationPointer
FixedImageMaskType::Pointer FixedImageMaskPointer
Superclass2::ElastixPointer ElastixPointer
unsigned int ReadTransformixPoints(const std::string &filename, typename MeshType::Pointer &mesh)
FixedPointSetType::ConstPointer FixedPointSetConstPointer
Superclass::MeasureType MeasureType
Superclass::TransformType TransformType
TFixedPointSet FixedPointSetType
virtual int BeforeAllBase(void)
FixedMeshType::ConstPointer FixedMeshConstPointer
OutputPointType::CoordRepType CoordRepType
Superclass1::InputPointType InputPointType
virtual void AfterEachIteration(void)
Superclass1::MovingPointSetType MovingPointSetType
Superclass::InputPointType InputPointType
Superclass2::ConfigurationType ConfigurationType
Superclass::ElastixType ElastixType
itk::SingleValuedCostFunction ITKBaseType
itk::PointSet< CoordinateRepresentationType, MovingImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, MovingImageDimension, MovingImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > > MovingPointSetType
Superclass1::MovingPointSetConstPointer MovingPointSetConstPointer
void WriteResultMesh(const char *filename, MeshIdType meshId)
Superclass1::FixedMeshContainerPointer FixedMeshContainerPointer
ElastixType::MovingImageType MovingImageType
Superclass::OutputPointType OutputPointType
Superclass::RegistrationPointer RegistrationPointer
void operator=(const Self &)
Superclass1::CoordinateRepresentationType CoordinateRepresentationType
elxClassNameMacro("MissingStructurePenalty")
itk::SmartPointer< const Self > ConstPointer
Superclass1::CellInterfaceType CellInterfaceType
TMovingPointSet MovingPointSetType
Superclass1::FixedMeshType FixedMeshType
Superclass2::FixedImageType FixedImageType
Superclass1::TransformPointer TransformPointer
Superclass1::TransformParametersType TransformParametersType
Superclass::ConfigurationPointer ConfigurationPointer
Superclass1::MappedMeshContainerPointer MappedMeshContainerPointer
virtual ~MissingStructurePenalty()
MissingStructurePenalty Self
This class is the elastix base class for all Metrics.
Computes the (pseudo) volume of the transformed surface mesh of a structure. .