Computer Assited Medical Intervention Tool Kit  version 4.0
Public Member Functions | Private Member Functions | Private Attributes | List of all members
DicomTreeSerieComponent Class Reference

This component allows you to read DICOM images files of a single SERIES of a given STUDY. More...

#include <DicomTreeSerieComponent.h>

Inherits camitk::ImageComponent.

Public Member Functions

 DicomTreeSerieComponent (const std::vector< std::string > &fileNames)
 Build a ImageComponent representing the volumic image of the acquistion by a specific MODALITY. More...
 
virtual ~DicomTreeSerieComponent ()
 Default Destructor. More...
 
- Public Member Functions inherited from camitk::ImageComponent
double getActualMaxColor () const
 Max gray level found in the image given its data type. More...
 
double getActualMinColor () const
 Min gray level found in the image given its data type. More...
 
int getActualNumberOfColors () const
 Actual Number of colors: difference betweent the maximun and the minimum gray levels found in the image. More...
 
SingleImageComponentgetArbitrarySlices ()
 Returns the arbitrary slice. More...
 
SingleImageComponentgetAxialSlices ()
 Returns the axial slice. More...
 
SingleImageComponentgetCoronalSlices ()
 Returns the coronal slice. More...
 
vtkSmartPointer< vtkImageData > getImageData () const
 get the image volume managed by this Component More...
 
vtkSmartPointer< vtkImageData > getImageDataWithFrameTransform ()
 Compute a copy of the original image data on which the frame transform has been applied. More...
 
QString getImageName () const
 getter/setter for the property More...
 
ImageOrientationHelper::PossibleImageOrientations getInitialOrientation () const
 Get the initial image orientation. More...
 
void getLastPixelPicked (int *x, int *y, int *z)
 Get the last pixel picked using CTRL + LEFT/RIGHT CLICK in voxel index (i, j, k) indicates the voxel index (no notion of voxel size) More...
 
void getLastPointPickedImageCoords (double *x, double *y, double *z)
 Get the last point picked using CTRL + LEFT/RIGHT CLICK in image real coordinates (this takes into account voxel size) More...
 
void getLastPointPickedWorldCoords (double *x, double *y, double *z)
 Get Get the last point picked using CTRL + LEFT/RIGHT CLICK in world coordinates This takes into account voxel size and image origin (and possible image rigid transforms). More...
 
virtual vtkSmartPointer< vtkWindowLevelLookupTable > getLut ()
 get the current lookup table More...
 
double getMaxColor () const
 Max possible gray level of the image given its data type. More...
 
double getMinColor () const
 Min possible gray level of the image given its data type. More...
 
int getNumberOfColors () const
 Number of colors: number of possible gray levels in the image computed from the min and the max of the data type ; e.g. More...
 
int getNumberOfSlices () const
 Number of axial slices (i.e. More...
 
const vtkSmartPointer< vtkMatrix4x4 > getRotationMatrix ()
 
SingleImageComponentgetSagittalSlices ()
 Returns the sagittal slice. More...
 
MeshComponentgetVolumeRenderingChild ()
 Returns the MeshComponent which will contain the volume rendering actor. More...
 
 ImageComponent (const QString &file) throw ( AbortException )
 constructor More...
 
 ImageComponent (vtkSmartPointer< vtkImageData > anImageData, const QString &name, bool copy=false, ImageOrientationHelper::PossibleImageOrientations initialOrientation=ImageOrientationHelper::RAI) throw ( AbortException )
 Creates an ImageComponent from a vtkImageData. More...
 
void pixelPicked (double x, double y, double z, SingleImageComponent *whoIsAsking)
 Method called when a pixel has been picked in the 3D view. More...
 
virtual void refresh () const
 force refresh of all interactive viewers that are displayng sub-components as ImageComponent is not itself displayed by any viewer More...
 
virtual void replaceImageData (vtkSmartPointer< vtkImageData > anImageData, bool copy=false, ImageOrientationHelper::PossibleImageOrientations initialOrientation=ImageOrientationHelper::RAI)
 Replaces the current image volume by the one given in parameters. More...
 
void setImageName (const QString &)
 
virtual void setLut (vtkSmartPointer< vtkWindowLevelLookupTable > lookupTable)
 Update the lookup table of the image viewer (see InterfaceBitMap). More...
 
virtual void setSelected (const bool b, const bool recursive=false)
 set selected will select all the Image components (axial, sagittal and coronal). More...
 
virtual ~ImageComponent ()
 Destructor. More...
 
virtual void updateProperty (QString, QVariant)
 
virtual unsigned int getNumberOfPropertyWidget ()
 return number of tabs in property explorer: there is more than one widget More...
 
virtual QWidget * getPropertyWidgetAt (unsigned int i, QWidget *parent=0)
 get the property widget (to view as tabs in the property explorer): the default property widget and the selection view More...
 
- Public Member Functions inherited from camitk::Component
 Component (const QString &file, const QString &name, Representation rep=NO_REPRESENTATION)
 Component constructor for top-level component (please use the other constructor for sub-level components). More...
 
 Component (Component *parentComponent, const QString &name, Representation rep=NO_REPRESENTATION) throw (AbortException)
 Component constructor for a Component that is a child of another Component You should not use this constructor for a top-level component. More...
 
virtual ~Component ()
 default destructor. More...
 
Representation getRepresentation () const
 return the type of representation concretely implemented by this Component in the InteractiveViewer. More...
 
bool isTopLevel () const
 return true if this component is a top-level component More...
 
virtual ComponentgetParentComponent ()
 get the parent component More...
 
virtual ComponentgetTopLevelComponent ()
 get the top-level component More...
 
virtual InterfaceFramegetFrame ()
 get the associated frame More...
 
virtual void setModified (bool modified=true)
 set the modified flag More...
 
virtual bool getModified () const
 set the modified flag More...
 
virtual void setVisibility (Viewer *, bool)
 set the visibility for a viewer More...
 
virtual bool getVisibility (Viewer *) const
 get the visibility of a viewer More...
 
virtual void refreshInterfaceNode ()
 Asks all viewers that are currently displaying this Component to rebuild the representation of the InterfaceNode for this Component. More...
 
virtual bool isSelected () const
 Check if this data component is selected. More...
 
const QString getFileName () const
 get the file name where the data have to be stored/were stored More...
 
void setFileName (const QString &)
 set the file name where the data have to be stored More...
 
bool event (QEvent *e)
 Overriden from QObject, this one is only intercepting signal for dynamic property changed (see constructor). More...
 
QMenu * getActionMenu ()
 Get a QMenu that contains all the action that can be applied to this component. More...
 
QStringList getHierarchy ()
 
bool isInstanceOf (QString className)
 Assert that a Component instance really inherits from a given className. More...
 
virtual QObject * getPropertyObject ()
 Get the property object that could be understood by PropertyEditor. More...
 
virtual Q_INVOKABLE PropertygetProperty (QString name)
 Get a Property given its name. More...
 
virtual bool addProperty (Property *)
 Add a new CamiTK property to the component. More...
 
virtual void addChild (InterfaceNode *)
 add a child Component (sub item in the hierarchy), and modify the child's parent to be equal to this instance More...
 
virtual void attachChild (InterfaceNode *)
 add a child Component (but leave its parent unchanged) More...
 
virtual void removeChild (InterfaceNode *)
 remove from the the sub item vector. More...
 
virtual void setParent (InterfaceNode *)
 set the parent Component. This method automatically remove this Component from its previous (if already had one parent Component) More...
 
virtual void deleteChildren ()
 delete all sub Component, but do not delete the pointer (only the top-level component has the right to do that) More...
 
virtual QString getName () const
 get the name to be displayed More...
 
virtual void setName (const QString &)
 set the name to be displayed More...
 
virtual const ComponentListgetChildren ()
 get the list of the InterfaceNode children (sub items in the hierarchy) More...
 
virtual bool doubleClicked ()
 this method is called each time the InterfaceNode is double clicked by the user. More...
 
virtual InterfaceNodegetParent ()
 get the parent Component More...
 
virtual QPixmap getIcon ()
 Get the pixmap that will be displayed for this node. More...
 
virtual bool inItalic () const
 A component name is not displayed in italic by default. More...
 
virtual QMenu * getPopupMenu (QWidget *parent=0)
 get the popup menu to display (always return NULL, overwrite this method if you want to give here you own popup) More...
 
const QString getLabel () const
 
void setLabel (QString newName)
 set the string used to display the label, do the same as setName More...
 
 delegateGet0 (myGeometry, getPointSet, vtkSmartPointer< vtkPointSet >) delegate1(myGeometry
 
vtkSmartPointer< vtkPointSet > delegate1 (myGeometry, setPointData, vtkSmartPointer< vtkDataArray >) delegateConstGet0(myGeometry
 
vtkSmartPointer< vtkPointSet > vtkSmartPointer< vtkAlgorithmOutput > delegate1 (myGeometry, setDataConnection, vtkSmartPointer< vtkAlgorithmOutput >) delegateGet1(myGeometry
 
vtkSmartPointer< vtkPointSet > vtkSmartPointer< vtkAlgorithmOutput > const virtual RenderingModes vtkSmartPointer< vtkProp > getProp (const QString &param)
 Return the vtkProp (actors, volumes and annotations) corresponding to the given name. More...
 
virtual unsigned int getNumberOfProp () const
 return the number of additional prop More...
 
virtual vtkSmartPointer< vtkProp > getProp (unsigned int index)
 return an additional prop by its index More...
 
virtual bool addProp (const QString &name, vtkSmartPointer< vtkProp > prop)
 insert an additional prop, defining it by its name (default visibility = false). More...
 
virtual bool removeProp (const QString &name)
 remove a given additional prop. More...
 
virtual void pointPicked (vtkIdType, bool)
 an inherited class can redefine this method something specific. More...
 
virtual void cellPicked (vtkIdType, bool)
 an inherited class can redefine this method something specific. More...
 
virtual void getBounds (double *bounds)
 compute the object's bounding box [xmin,xmax, ymin,ymax, zmin,zmax], see Component.cpp More...
 
virtual double getBoundingRadius ()
 compute the object's bounding sphere radius, More...
 
 delegate4 (myGeometry, setPointPosition, const unsigned int, const double, const double, const double) delegateAndInvokeChildren1(myGeometry
 
const virtual RenderingModes const InterfaceGeometry::RenderingModes getRenderingModes () const
 see Component.cpp More...
 
 delegateAndInvokeChildren1 (myGeometry, setEnhancedModes, const EnhancedModes) delegateConstGet0(myGeometry
 
const EnhancedModes delegateAndInvokeChildren1Array (myGeometry, setActorColor, const RenderingModes, double, 4) delegateAndInvokeChildren4(myGeometry
 
const EnhancedModes const const const const virtual double void getActorColor (const RenderingModes, double [4])
 see Component.cpp More...
 
 delegateAndInvokeChildren3 (myGeometry, setColor, const double, const double, const double) delegateAndInvokeChildren4(myGeometry
 
const const const const double delegateAndInvokeChildren2 (myGeometry, setActorOpacity, const RenderingModes, const double) delegateConstGet1(myGeometry
 
const const const const double const RenderingModes delegateAndInvokeChildren1 (myGeometry, setOpacity, const double) delegate2(myGeometry
 
const const const const double const RenderingModes double delegate1 (myGeometry, setTexture, vtkSmartPointer< vtkTexture >) virtual void setGlyphType(const GlyphTypes type
 
 delegate1 (myGeometry, setLinesAsTubes, bool) delegate1(myGeometry
 
 delegateConstGet0 (mySlice, getImageData, vtkSmartPointer< vtkImageData >) delegate1(mySlice
 
vtkSmartPointer< vtkImageData > delegateConstGet0 (mySlice, get2DImageActor, vtkSmartPointer< vtkImageActor >) delegateConstGet0(mySlice
 
vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > delegateConstGet0 (mySlice, getPickPlaneActor, vtkSmartPointer< vtkActor >) delegateGet0(mySlice
 
vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > delegate3 (mySlice, pixelPicked, double, double, double) delegate0(mySlice
 
vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane delegate1 (mySlice, setSlice, int) delegate3(mySlice
 
vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane double delegate1 (mySlice, setRotationX, double) delegate1(mySlice
 
vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane double double delegate1 (mySlice, setRotationZ, double) delegateConstGet0(mySlice
 
vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane double double int delegate3 (mySlice, setPixelRealPosition, double, double, double) delegate1(mySlice
 
vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane double double int virtual vtkSmartPointer< vtkTransform > double getRotationX () const
 see Component.cpp More...
 
virtual double getRotationY () const
 see Component.cpp More...
 
virtual double getRotationZ () const
 see Component.cpp More...
 
virtual int getSlice () const
 see Component.cpp More...
 
const QString & getFrameName () const
 Hierarchy accessors / Modifyers. More...
 
 delegate1 (myFrame, setFrameName, QString) InterfaceFrame *getParentFrame() const
 
void setParentFrame (InterfaceFrame *frame, bool keepTransform=true)
 Set the parent frame and update or not its transform during the parent transition. More...
 
const QVector< InterfaceFrame * > & getChildrenFrame () const
 Get the Children Frames from the current Frame in the Frame Hierarchy The Frame hierarchy may not be the same as the Component Hierarchy. More...
 
const vtkSmartPointer< vtkTransform > getTransformFromWorld () const
 Transforms accessors / Modifyers. More...
 
const vtkSmartPointer< vtkTransform > getTransform () const
 Get the transformation with respect to the parent frame. More...
 
const vtkSmartPointer< vtkTransform > getTransformFromFrame (InterfaceFrame *frame) const
 Compute the transformation from any other frame to the current frame. More...
 
 delegate1 (myFrame, setTransform, vtkSmartPointer< vtkTransform >) delegate0(myFrame
 
resetTransform delegate3 (myFrame, translate, double, double, double) delegate3(myFrame
 
resetTransform double delegate3 (myFrame, rotateVTK, double, double, double) delegate3(myFrame
 
resetTransform double double delegate3 (myFrame, setTransformTranslationVTK, double, double, double) delegate3(myFrame
 
resetTransform double double double delegate3 (myFrame, setTransformRotationVTK, double, double, double) vtkSmartPointer< vtkAxesActor > getFrameAxisActor()
 
 delegate2 (myFrame, setFrameVisibility, Viewer *, bool) bool getFrameVisibility(Viewer *viewer) const
 
 delegate1 (myFrame, addFrameChild, InterfaceFrame *) delegate1(myFrame
 
- Public Member Functions inherited from camitk::InterfaceProperty
virtual unsigned int getIndexOfPropertyExplorerTab ()=0
 Get the index of the tab in the PropertyExplorer to select for display. More...
 
virtual void setIndexOfPropertyExplorerTab (unsigned int index)=0
 Set the index of the tab in the PropertyExplorer to select for display. More...
 
virtual ~InterfaceProperty ()
 empty virtual destructor, to avoid memory leak More...
 
- Public Member Functions inherited from camitk::InterfaceNode
virtual ~InterfaceNode ()
 empty virtual destructor, to avoid memory leak More...
 
- Public Member Functions inherited from camitk::InterfaceGeometry
virtual ~InterfaceGeometry ()
 empty virtual destructor, to avoid memory leak More...
 
virtual vtkSmartPointer< vtkPointSet > getPointSet ()=0
 
virtual void setPointSet (vtkSmartPointer< vtkPointSet >)=0
 set the low-level data set. More...
 
virtual void setPointData (vtkSmartPointer< vtkDataArray >)=0
 set the point data (may contains a lookup table). More...
 
virtual void setMeshWorldTransform (vtkSmartPointer< vtkTransform >)=0
 set the transformation for 3D representation More...
 
virtual vtkSmartPointer< vtkAlgorithmOutput > getDataPort () const =0
 get the custom algorithm pipeline input. More...
 
virtual void setDataConnection (vtkSmartPointer< vtkAlgorithmOutput >)=0
 Set/reset the connection for the InterfaceGeometry internal algorithm. More...
 
virtual vtkSmartPointer< vtkActor > getActor (const RenderingModes)=0
 Return the actor for the representation mode, NULL if the actor doesn't exist. More...
 
virtual void setTexture (vtkSmartPointer< vtkTexture >)=0
 Set a texture to this object. More...
 
virtual void setPointPosition (const unsigned int orderNumber, const double x, const double y, const double z)=0
 set a given point position More...
 
virtual void setRenderingModes (const RenderingModes)=0
 
virtual void setEnhancedModes (const EnhancedModes)=0
 set the enhanced mode More...
 
virtual const EnhancedModes getEnhancedModes () const =0
 get the current enhanced mode More...
 
virtual void setActorColor (const RenderingModes, double *color)=0
 Set the color of given representation modes. More...
 
virtual void setActorColor (const RenderingModes, const double, const double, const double)=0
 Set the color of given representation modes. More...
 
virtual void getActorColor (const RenderingModes, double *color)=0
 Get the color of given representation modes in the second parameter. More...
 
virtual void setColor (const double, const double, const double)=0
 Set an (r,g,b) color to all representation modes, without changing the opacity. More...
 
virtual void setColor (const double, const double, const double, const double)=0
 Set an (r,g,b,a) color to all representation modes. More...
 
virtual void setActorOpacity (const RenderingModes, const double)=0
 Set the opacity of this representation modes. WARNING color field (surfaceColor, ...) are not modified! More...
 
virtual double getActorOpacity (const RenderingModes) const =0
 Return the opacity of a given renderng mode. More...
 
virtual void setOpacity (const double)=0
 Set the opacity of this object. WARNING color field (surfaceColor, ...) are not modified! More...
 
virtual void setMapperScalarRange (double min, double max)=0
 Set the mapper scalar range. More...
 
virtual void setGlyphType (const GlyphTypes type, const double size=0.0)=0
 Set the glyph type (a glyph is a geometric representation attached to every point in the input dataset). More...
 
virtual void setLinesAsTubes (bool)=0
 set the lines as tubes (works only for vtkDataSet representation that contains lines) More...
 
- Public Member Functions inherited from camitk::InterfaceFrame
virtual void addFrameChild (InterfaceFrame *frame)=0
 Add the input frame as a child of the current frame. More...
 
virtual vtkSmartPointer< vtkAxesActor > getFrameAxisActor ()=0
 Gives the 3D representation of the frame (based on xyz arrows) More...
 
virtual bool getFrameVisibility (Viewer *viewer) const =0
 Get the Component Frame visibility for a given viewer. More...
 
virtual void removeFrameChild (InterfaceFrame *frame)=0
 Remove the input frame as a child of the current frame. More...
 
virtual void setFrameVisibility (Viewer *viewer, bool visible)=0
 Set the Component Frame visible for a given viewer. More...
 
virtual ~InterfaceFrame ()
 empty virtual destructor, to avoid memory leak More...
 
virtual void setFrameName (QString name)=0
 Set the Frame Unique identifyer. More...
 
virtual InterfaceFramegetParentFrame () const =0
 Get the parent frame. More...
 
virtual void setTransform (vtkSmartPointer< vtkTransform > transform)=0
 Set the current input frame position (according to its parent Frame) More...
 
virtual void resetTransform ()=0
 Set the current frame transform to identity. More...
 
virtual void translate (double x, double y, double z)=0
 Apply a translation relative to the current position. More...
 
virtual void rotate (double aroundX, double aroundY, double aroundZ)=0
 Apply rotations relative to the current position in the alphabetical order (X, Y, Z). More...
 
virtual void rotateVTK (double aroundX, double aroundY, double aroundZ)=0
 Apply a rotation relative to the current position, using the VTK rotation order (Z, X, Y) More...
 
virtual void setTransformTranslation (double x, double y, double z)=0
 Set the translation part of the 3D space transformation of the current frame. More...
 
virtual void setTransformTranslationVTK (double x, double y, double z)=0
 Set the translation part of the 3D space transformation of the current frame. More...
 
virtual void setTransformRotation (double aroundX, double aroundY, double aroundZ)=0
 Set the rotation part of the 3D space transformation of the current frame. More...
 
virtual void setTransformRotationVTK (double aroundX, double aroundY, double aroundZ)=0
 Set the rotation part of the 3D space transformation of the current frame. More...
 

Private Member Functions

camitk::ImageOrientationHelper::PossibleImageOrientations readDirectCosinesAngle (const std::vector< std::string > &fileNames) const
 Read the direct cosines angles from the input image. More...
 
double roundCosine (const double &value) const
 Round the cosine input to the closest value between -1, 0 or 1. More...
 
vtkSmartPointer< vtkImageData > translate (vtkSmartPointer< vtkImageData > imageData, double x, double y, double z)
 Translate the image data to the frame origin and store the opposite translate as a frame of the component This allows to get the image frame in RAI origin of the image. More...
 
void updateLUT ()
 Update the LUT of the image by reading the good information from the DICOM headers. More...
 

Private Attributes

vtkGDCMImageReader * imageReader
 The image reader using GDCM that allows to read DICOM image as vtkImageData. More...
 

Additional Inherited Members

- Public Types inherited from camitk::Component
enum  Representation { GEOMETRY, SLICE, NO_REPRESENTATION }
 The different representation that can be implemented to represent this Component in the InteractiveViewer. More...
 
- Public Types inherited from camitk::InterfaceGeometry
enum  EnhancedMode { Normal = 0x0, Hidden = 0x1, Shaded = 0x2, Highlighted = 0x4 }
 (and QFlags EnhancedModes) handle the way the rendering actors will be enhanced or not (from completely hidden to highlighted) More...
 
enum  GlyphType { NoGlyph = 0x0, Sphere = 0x1 }
 (and QFlags GlyphTypes) is the type of glyph attached to the geometry representation More...
 
enum  RenderingMode { None = 0x0, Surface = 0x1, Wireframe = 0x2, Points = 0x4 }
 (and QFlags RenderingModes) handle actor rendering options (render this InterfaceGeometry as a surface, a wireframe and set of points). More...
 
- Public Attributes inherited from camitk::Component
 setPointSet
 
vtkSmartPointer< vtkPointSet > getDataPort
 
vtkSmartPointer< vtkPointSet > vtkSmartPointer< vtkAlgorithmOutput > getActor
 
vtkSmartPointer< vtkPointSet > vtkSmartPointer< vtkAlgorithmOutput > vtkSmartPointer< vtkActor >
 
 setRenderingModes
 
 getEnhancedModes
 
const EnhancedModes setActorColor
 
const EnhancedModes const RenderingModes
 
const EnhancedModes const const double
 
const EnhancedModes const const const double
 
 setColor
 
const double
 
const const double
 
const const const double
 
const const const const double getActorOpacity
 
const const const const double double
 
const const const const double const RenderingModes setMapperScalarRange
 
const const const const double const RenderingModes double
 
const const const const double const RenderingModes double const double size = 0.0)
 
 setMeshWorldTransform
 
 setOriginalVolume
 
vtkSmartPointer< vtkImageData > get3DImageActor
 
vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > getPixelActor
 
vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane setSlice
 
vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane double
 
vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane double setRotationY
 
vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane double double getNumberOfColors
 
vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane double double int setImageWorldTransform
 
resetTransform rotate
 
resetTransform double
 
resetTransform double setTransformTranslation
 
resetTransform double double
 
resetTransform double double setTransformRotation
 
resetTransform double double double
 
 removeFrameChild
 
- Protected Member Functions inherited from camitk::ImageComponent
virtual void setImageData (vtkSmartPointer< vtkImageData > anImageData, bool copy, ImageOrientationHelper::PossibleImageOrientations initialOrientation=ImageOrientationHelper::RAI, vtkSmartPointer< vtkMatrix4x4 > initialTransformMatrix=NULL)
 Set the image data of the volumic images with the given orientation options. More...
 
virtual void updateImageProperties ()
 Update the Properties displayed in the PropertyExplorer It should be called by setImageData to update the properties with respect to the new image data The properties updated are: More...
 
- Protected Attributes inherited from camitk::Component
ComponentList childrenComponent
 The explorer sub items. More...
 
unsigned int indexOfPropertyExplorerTab
 The PropertyExplorer tab index to select once refreshed. More...
 
bool isSelectedFlag
 tells if this particular Component is selected or not More...
 
bool modifiedFlag
 the modificatio flag (could be extended to manage a undo/redo list) More...
 
QString myFileName
 the file name from which the Component is loaded More...
 
InterfaceFramemyFrame
 myFrame is the pose (position and orientation) of the Component in the world frame, the Component delegates all InterfaceFrame activity to myFrame (delegation pattern) More...
 
InterfaceGeometrymyGeometry
 myGeometry is the 3d representation of this Component, the Component delegates all InterfaceGeometry activity to myGeometry (delegation pattern) More...
 
InterfaceNodemyParentNode
 who is the boss? The Component! More...
 
InterfaceBitMap * mySlice
 mySlice is the slice representation of this data component, the Component delegates all InterfaceBitMap activity to mySlice (delegation pattern) More...
 

Detailed Description

This component allows you to read DICOM images files of a single SERIES of a given STUDY.

One SERIES of images is the result of one medical examination using one MODALITY.

This component works on images acquired of a same SERIES for a given STUDY This SERIES of images will be represented as a 3D volumic image (ImageComponent) DICOM images tags are also displayed as Property in the PropertyExplorer (DICOM tab).

Note
Requires GDCM library in order to work correctly. This component does not support 2D Images series (GDCM limitation)

Constructor & Destructor Documentation

◆ DicomTreeSerieComponent()

DicomTreeSerieComponent::DicomTreeSerieComponent ( const std::vector< std::string > &  fileNames)

Build a ImageComponent representing the volumic image of the acquistion by a specific MODALITY.

Parameters
parentthe parent DicomStudyComponent that contains all the SERIES.
paththe image slices of a same SERIES for a given STUDY.

References CAMITK_ERROR, CAMITK_WARNING, imageReader, readDirectCosinesAngle(), camitk::ImageComponent::setImageData(), camitk::Component::setName(), camitk::Component::setParent(), and translate().

◆ ~DicomTreeSerieComponent()

DicomTreeSerieComponent::~DicomTreeSerieComponent ( )
virtual

Default Destructor.

Member Function Documentation

◆ readDirectCosinesAngle()

camitk::ImageOrientationHelper::PossibleImageOrientations DicomTreeSerieComponent::readDirectCosinesAngle ( const std::vector< std::string > &  fileNames) const
private

Read the direct cosines angles from the input image.

Parameters
fileNamesthe SERIES slices
Returns
the corresponding ImageOrientation, rounded modulo 90 degrees

References CAMITK_WARNING, and roundCosine().

Referenced by DicomTreeSerieComponent().

◆ roundCosine()

double DicomTreeSerieComponent::roundCosine ( const double value) const
private

Round the cosine input to the closest value between -1, 0 or 1.

Parameters
valuethe input cosine value
Returns
the rounded cosine value -1, 0 or 1

Referenced by readDirectCosinesAngle().

◆ translate()

vtkSmartPointer< vtkImageData > DicomTreeSerieComponent::translate ( vtkSmartPointer< vtkImageData >  imageData,
double  x,
double  y,
double  z 
)
private

Translate the image data to the frame origin and store the opposite translate as a frame of the component This allows to get the image frame in RAI origin of the image.

Else, picking won't work.

Returns
the imageData translated.

Referenced by DicomTreeSerieComponent().

◆ updateLUT()

void DicomTreeSerieComponent::updateLUT ( )
private

Update the LUT of the image by reading the good information from the DICOM headers.

Note
This method would have to be removed as soons as the CamiTK LUT is updated and working.

References camitk::ImageComponent::getLut(), and imageReader.

Member Data Documentation

◆ imageReader

vtkGDCMImageReader* DicomTreeSerieComponent::imageReader
private

The image reader using GDCM that allows to read DICOM image as vtkImageData.

Note
This class allows to make the bridge between GDCM and CamiTK.

Referenced by DicomTreeSerieComponent(), and updateLUT().


The documentation for this class was generated from the following files: