►Cclipper::Array2d< T > | Simple 2-d array class |
Cclipper::Matrix< T > | General matrix class: like Array2d but with numerical methods |
►Cclipper::Array2d< char > | |
Cclipper::Matrix< char > | |
Cclipper::Array2d< ffttype * > | |
Cclipper::Array2d< std::complex< ffttype > * > | |
Cclipper::Array2d< unsigned char > | |
Cclipper::Atom | Atom class |
►Cclipper::AtomShapeFn | Atomic shape function object |
Cclipper::AtomSF | Atomic scattering factor object |
►Cclipper::BasisFn_base | Abstract base class for resolution function basis functions |
Cclipper::BasisFn_aniso_gaussian | Simple anisotropic Gaussian basis function |
Cclipper::BasisFn_binner | Simple binning basis function |
Cclipper::BasisFn_expcubic | Simple Expcubic basis function |
Cclipper::BasisFn_gaussian | Simple Gaussian basis function |
Cclipper::BasisFn_linear | Simple linear basis function |
Cclipper::BasisFn_log_aniso_gaussian | Simple anisotropic Gaussian basis function |
Cclipper::BasisFn_log_gaussian | Simple log Gaussian basis function |
Cclipper::BasisFn_spline | Simple smooth basis function |
►Cclipper::Cell_descr | Cell description (automatically converts to radians) |
►Cclipper::Cell | Cell object |
Cclipper::CCell | CCell container |
Cclipper::ClipperInstance | |
Cclipper::ClipperInstantiator | |
Cclipper::Compare_grid | |
Cclipper::datatypes::Compute_abcd_from_phifom< dtype > | Compute from Phi_fom to ABCD ( C = D = 0 ) |
Cclipper::datatypes::Compute_add_abcd< dtype > | Add two ABCD datalists |
Cclipper::datatypes::Compute_add_fphi< dtype > | Add two F_phi datalists |
Cclipper::datatypes::Compute_diff_fsigf_from_fsigfano< dtype > | Compute from F_sigF_anom to F_sigF (difference structure factor) |
Cclipper::datatypes::Compute_EsigE_from_FsigF< dtype > | Compute from F_sigF to E_sigE |
Cclipper::datatypes::Compute_fphi_from_fsigf_phifom< dtype > | Compute from F_sigF+Phi_fom to F_phi |
Cclipper::datatypes::Compute_FsigF< dtype, T > | Compute from F_sigF to F_sigF |
Cclipper::datatypes::Compute_mean_fsigf_from_fsigfano< dtype > | Compute from F_sigF_anom to F_sigF (mean structure factor) |
Cclipper::datatypes::Compute_neg_fphi< dtype > | Negate F_phi (i.e. advance phase by pi) |
Cclipper::datatypes::Compute_phifom_from_abcd< dtype > | Compute from ABCD to Phi_fom by phase integration (loses bimodality) |
Cclipper::datatypes::Compute_scale_u< T > | |
Cclipper::datatypes::Compute_scale_u_aniso< T > | Apply scale and U to any scalable datatype |
Cclipper::datatypes::Compute_scale_u_iso< T > | Apply scale and U to any scalable datatype |
Cclipper::datatypes::Compute_sub_fphi< dtype > | Subtract two F_phi datalists |
►Cclipper::Container | Definition for a generic container Object |
Cclipper::CCell | CCell container |
Cclipper::CGrid_sampling | CGrid_sampling container |
Cclipper::CHKL_data< T > | Reflection data list container |
Cclipper::CHKL_info | HKL list and indexing object container |
Cclipper::CNXmap< T > | Non-Crystallographic map container |
Cclipper::CNXmap_operator< T > | Non-Crystallographic map operator container |
Cclipper::CResolution | Resolution container |
Cclipper::CSpacegroup | Spacegroup container |
Cclipper::CXmap< T > | Crystallographic map container |
►Cclipper::Datatype_base | Reflection data type objects |
Cclipper::datatypes::ABCD< dtype > | Reflection data type: Hendrickson-Lattman coeff |
Cclipper::datatypes::D_sigD< dtype > | |
Cclipper::datatypes::E_sigE< dtype > | Reflection data type: E + sigE |
Cclipper::datatypes::E_sigE_ano< dtype > | Reflection data type: E(+) E(+) sigE(+) sigE(-) cov+- |
Cclipper::datatypes::F_phi< dtype > | Reflection data type: F + phi model or map coeff (e.g. Fcalc, Fbest) |
Cclipper::datatypes::F_sigF< dtype > | Reflection data type: F + sigF |
Cclipper::datatypes::F_sigF_ano< dtype > | Reflection data type: F(+) F(+) sigF(+) sigF(-) cov+- |
Cclipper::datatypes::Flag | Reflection data type: Free-R flag |
Cclipper::datatypes::Flag_bool | Reflection data type: boolean (false = missing) |
Cclipper::datatypes::I_sigI< dtype > | Reflection data type: I + sigI |
Cclipper::datatypes::I_sigI_ano< dtype > | Reflection data type: I(+) I(+) sigI(+) sigI(-) cov+- |
Cclipper::datatypes::Phi_fom< dtype > | Reflection data type: best phi + fom |
Cclipper::Euler< T > | Euler angle class |
Cclipper::Euler_ccp4 | Euler_ccp4 angle class |
Cclipper::BasisFn_base::Fderiv | Object holding the basis function and its first two derivatives |
►Cclipper::FFTmap_base | |
►Cclipper::FFTmap_p1 | FFTmap_p1: low level P1 map used for calculating FFTs |
Cclipper::FFTmap | FFTmap: P1 map with symmetry used for calculating FFTs |
►Cclipper::FFTmap_sparse_p1_base | Base type for sparse P1 fft maps |
Cclipper::FFTmap_sparse_p1_hx | FFTmap_sparse_p1_hx: low level sparse P1 map used for calculating FFTs |
Cclipper::FFTmap_sparse_p1_xh | FFTmap_sparse_p1_xh: low level sparse P1 map used for calculating FFTs |
►Cclipper::Generic_ordinal | Generic ordinal gernerator |
Cclipper::Resolution_ordinal | Resolution ordinal gernerator |
Cclipper::HKL_class | Reflection class |
►Cclipper::HKL_data_base | HKL_data_base |
►Cclipper::HKL_data< T > | HKL_data<> |
Cclipper::CHKL_data< T > | Reflection data list container |
Cclipper::HKL_data< datatypes::ABCD< float > > | |
Cclipper::HKL_data< datatypes::F_sigF< float > > | |
Cclipper::HKL_data< T1 > | |
Cclipper::HKL_data< T2 > | |
►Cclipper::HKL_info | HKL list container and tree root |
Cclipper::CHKL_info | HKL list and indexing object container |
Cclipper::HKL_data_cacheobj | |
Cclipper::HKL_lookup | Fast reflection lookup object |
►Cclipper::HKL_info::HKL_reference_base | HKL reference base class |
Cclipper::HKL_info::HKL_reference_coord | HKL reference with coord-like behaviour |
Cclipper::HKL_info::HKL_reference_index | HKL reference with index-like behaviour |
Cclipper::HKL_sampling | HKL sampling of reciprocal space |
Cclipper::HKL_lookup::hlookup | Lookup on h |
Cclipper::Interp_cubic | Wrapper class for third-order (cubic) interpolation fns |
Cclipper::Interp_linear | Wrapper class for first-order (linear) interpolation fns |
Cclipper::Interp_nearest | Wrapper class for zeroth-order (nearest neighbour) interpolation fns |
Cclipper::Xmap_cacheobj::Key | |
Cclipper::HKL_data_cacheobj::Key | |
Cclipper::HKL_lookup::klookup | Lookup on k |
Cclipper::data::LGdata | |
Cclipper::HKL_lookup::llookup | Lookup on l |
Cclipper::LogPhaseProb< N > | Log phase probability distribution object |
Cclipper::Map_index_sort | Generic map sorting class |
►Cclipper::Xmap_base::Map_reference_base | Map reference base class |
Cclipper::Xmap_base::Map_reference_coord | Map reference with coordinate-like behaviour |
Cclipper::Xmap_base::Map_reference_index | Map reference with index-like behaviour |
►Cclipper::NXmap_base::Map_reference_base | Map reference base class |
Cclipper::NXmap_base::Map_reference_coord | Map reference with coordinate-like behaviour |
Cclipper::NXmap_base::Map_reference_index | Map reference with index-like behaviour |
Cclipper::Map_stats | Generic map statistics class |
►Cclipper::Mat33< T > | 3x3-matrix class |
Cclipper::Curv_frac< T > | Fractional (cell) curvatures, with respect to fractional u,v,w |
Cclipper::Curv_map< T > | Map coordinate curvatures, with respect to grid u,v,w |
Cclipper::Curv_orth< T > | Orthogonal (Angstom) curvatures, with respect to orthogonal x,y,z |
Cclipper::Mat33< int > | |
Cclipper::Mat33sym< T > | Compressed form for 3x3 symmetric matrix class |
►Cclipper::Mat33sym<> | |
Cclipper::U_aniso_frac | Anisotropic fractional atomic displacement parameters |
Cclipper::U_aniso_orth | Anisotropic orthogonal atomic displacement parameters |
Cclipper::Message | Message handler class |
►Cclipper::Message_base | Base type for messages |
Cclipper::Message_ctor | Constructor message (level = 2) |
Cclipper::Message_dtor | Destructor message (level = 2) |
Cclipper::Message_fatal | Fatal message (level = 9) |
Cclipper::Message_generic | Generic message |
Cclipper::Message_info | Info message (level = 1) |
Cclipper::Message_warn | Warning message (level = 5) |
Cclipper::Metric_tensor | Metric tensor |
Cclipper::Mutex | Mutex class: used for locking and unlocking shared resources |
►Cclipper::NX_operator | NX_operator: non-crystal map operator |
►Cclipper::NXmap_operator< T > | NXmap_operator: non-crystal map operator referencing a particular NXmap |
Cclipper::CNXmap_operator< T > | Non-Crystallographic map operator container |
►Cclipper::NXmap_base | NXmap_base: base for non-crystallographic map class |
►Cclipper::NXmap< T > | NXmap<T>: actual non-crystallographic map class |
Cclipper::CNXmap< T > | Non-Crystallographic map container |
Cclipper::ObjectCache< T > | Object Cache manager |
Cclipper::ObjectCache< clipper::HKL_data_cacheobj > | |
Cclipper::ObjectCache< clipper::Spgr_cacheobj > | |
Cclipper::ObjectCache< clipper::Xmap_cacheobj > | |
Cclipper::Polar_ccp4 | Polar_ccp4 angle class |
►Cclipper::Prob_phi_2d | 2-d angular probability distibution class |
Cclipper::Ramachandran | Ramachandran plot class |
►Cclipper::Property_base | Base class for properties of arbitrary types |
Cclipper::Property< T > | Template for a property holding an arbitrary type |
Cclipper::PropertyManager | Class for holding a list of labelled properties of arbitrary types |
Cclipper::Range< T > | Range - upper and lower bounds of some type |
►Cclipper::Range< ftype > | |
►Cclipper::Range_sampling | Range sampling: discrete sampling of a real range |
Cclipper::Histogram | General histogram class |
Cclipper::TargetFn_base::Rderiv | Object holding the residual function and first two derivatives |
Cclipper::ObjectCache< T >::Reference | ObjectCache reference class |
►Cclipper::Resolution | Resolution in angstroms |
Cclipper::CResolution | Resolution container |
►Cclipper::ResolutionFn | 2nd order resolution function evaluator |
Cclipper::ResolutionFn_nonlinear | 2nd order resolution function evaluator |
Cclipper::Rotation | Rotation class |
Cclipper::RTop< T > | Rotation-translation operator |
►Cclipper::RTop< int > | |
Cclipper::Isymop | Integerised symmetry matrix |
►Cclipper::RTop<> | |
►Cclipper::RTop_frac | Fractional operator class |
Cclipper::Symop | Crystallographic symmetry operator |
Cclipper::RTop_orth | Orthogonal operator class |
Cclipper::data::SFdata | |
Cclipper::data::SGdata | |
Cclipper::Spgr_cacheobj | |
►Cclipper::Spgr_descr | Spacegroup description |
►Cclipper::Spacegroup | Spacegroup object |
Cclipper::CSpacegroup | Spacegroup container |
►Cstring | |
Cclipper::String | String extension with simple parsing methods |
Cclipper::Symop_code | Compressed encoded symmetry operator |
►Cclipper::TargetFn_base | Abstract base class for least-squares resolution function target functions |
Cclipper::TargetFn_meanEnth< T > | Simple mean |E|n target |
Cclipper::TargetFn_meanFnth< T > | Simple mean |F|n target |
Cclipper::TargetFn_scaleEsq< T > | |E|2 scaling target |
Cclipper::TargetFn_scaleF1F2< T1, T2 > | |F|2 scaling target |
Cclipper::TargetFn_scaleI1I2< T1, T2 > | |
Cclipper::TargetFn_scaleLogF1F2< T1, T2 > | Log |F|2 scaling target |
Cclipper::TargetFn_scaleLogI1I2< T1, T2 > | Log |I| scaling target |
Cclipper::TargetFn_sigmaa< T > | |
Cclipper::TargetFn_sigmaa_omegaa< T > | |
►Cclipper::Test_base | Base class for clipper self-test classes |
Cclipper::Test_core | |
Cclipper::data::Test_data | Class to return test data |
Cclipper::data::TESThkldata | |
Cclipper::data::TESTxyzdata | |
Cclipper::Thread_base | Thread base class: Override this to create new threads |
Cclipper::Util | Utility class |
►Cclipper::Vec3< T > | 3-vector class |
Cclipper::Grad_frac< T > | Fractional (cell) gradient, with respect to fractional u,v,w |
Cclipper::Grad_map< T > | Map coordinate gradient, with respect to grid u,v,w |
Cclipper::Grad_orth< T > | Orthogonal (Angstom) gradient, with respect to orthogonal x,y,z |
►Cclipper::Vec3< int > | |
Cclipper::Coord_grid | Grid coordinate |
►Cclipper::Grid | Generic grid |
Cclipper::Grid_range | Grid range class: defines array limits for a grid |
►Cclipper::Grid_sampling | Grid sampling of a unit cell |
Cclipper::CGrid_sampling | CGrid_sampling container |
Cclipper::HKL | Reflection 'Miller' index |
►Cclipper::Vec3<> | |
Cclipper::Coord_frac | Fractional (cell) coordinates |
Cclipper::Coord_map | Map coordinate: this is like Coord_grid, but non-integer |
Cclipper::Coord_orth | Orthogonal (Angstrom) coordinates |
Cclipper::Coord_reci_frac | Fractional reciprocal coordinate (i.e. non-integer hkl) |
Cclipper::Coord_reci_orth | Orthogonal reciprocal coordinate (length of which is invresolsq) |
►Cvector | |
Cclipper::Atom_list | Atom list class |
Cclipper::Spgr_descr::Symop_codes | Vector of symop codes and associated methods |
►Cclipper::Xmap_base | Xmap_base: base for crystallographic map class |
►Cclipper::Xmap< T > | Xmap<T>: actual crystallographic map class |
Cclipper::CXmap< T > | Crystallographic map container |
Cclipper::Xmap_cacheobj | |