►Nclipper | |
►Ndata | |
CLGdata | |
CSFdata | |
CSGdata | |
CTest_data | Class to return test data |
CTESThkldata | |
CTESTxyzdata | |
►Ndatatypes | |
CABCD | Reflection data type: Hendrickson-Lattman coeff |
CCompute_abcd_from_phifom | Compute from Phi_fom to ABCD ( C = D = 0 ) |
CCompute_add_abcd | Add two ABCD datalists |
CCompute_add_fphi | Add two F_phi datalists |
CCompute_diff_fsigf_from_fsigfano | Compute from F_sigF_anom to F_sigF (difference structure factor) |
CCompute_EsigE_from_FsigF | Compute from F_sigF to E_sigE |
CCompute_fphi_from_fsigf_phifom | Compute from F_sigF+Phi_fom to F_phi |
CCompute_FsigF | Compute from F_sigF to F_sigF |
CCompute_mean_fsigf_from_fsigfano | Compute from F_sigF_anom to F_sigF (mean structure factor) |
CCompute_neg_fphi | Negate F_phi (i.e. advance phase by pi) |
CCompute_phifom_from_abcd | Compute from ABCD to Phi_fom by phase integration (loses bimodality) |
CCompute_scale_u | |
CCompute_scale_u_aniso | Apply scale and U to any scalable datatype |
CCompute_scale_u_iso | Apply scale and U to any scalable datatype |
CCompute_sub_fphi | Subtract two F_phi datalists |
CD_sigD | |
CE_sigE | Reflection data type: E + sigE |
CE_sigE_ano | Reflection data type: E(+) E(+) sigE(+) sigE(-) cov+- |
CF_phi | Reflection data type: F + phi model or map coeff (e.g. Fcalc, Fbest) |
CF_sigF | Reflection data type: F + sigF |
CF_sigF_ano | Reflection data type: F(+) F(+) sigF(+) sigF(-) cov+- |
CFlag | Reflection data type: Free-R flag |
CFlag_bool | Reflection data type: boolean (false = missing) |
CI_sigI | Reflection data type: I + sigI |
CI_sigI_ano | Reflection data type: I(+) I(+) sigI(+) sigI(-) cov+- |
CPhi_fom | Reflection data type: best phi + fom |
CArray2d | Simple 2-d array class |
CAtom | Atom class |
CAtom_list | Atom list class |
CAtomSF | Atomic scattering factor object |
CAtomShapeFn | Atomic shape function object |
CBasisFn_aniso_gaussian | Simple anisotropic Gaussian basis function |
►CBasisFn_base | Abstract base class for resolution function basis functions |
CFderiv | Object holding the basis function and its first two derivatives |
CBasisFn_binner | Simple binning basis function |
CBasisFn_expcubic | Simple Expcubic basis function |
CBasisFn_gaussian | Simple Gaussian basis function |
CBasisFn_linear | Simple linear basis function |
CBasisFn_log_aniso_gaussian | Simple anisotropic Gaussian basis function |
CBasisFn_log_gaussian | Simple log Gaussian basis function |
CBasisFn_spline | Simple smooth basis function |
CCCell | CCell container |
CCell | Cell object |
CCell_descr | Cell description (automatically converts to radians) |
CCGrid_sampling | CGrid_sampling container |
CCHKL_data | Reflection data list container |
CCHKL_info | HKL list and indexing object container |
CClipperInstance | |
CClipperInstantiator | |
CCNXmap | Non-Crystallographic map container |
CCNXmap_operator | Non-Crystallographic map operator container |
CCompare_grid | |
CContainer | Definition for a generic container Object |
CCoord_frac | Fractional (cell) coordinates |
CCoord_grid | Grid coordinate |
CCoord_map | Map coordinate: this is like Coord_grid, but non-integer |
CCoord_orth | Orthogonal (Angstrom) coordinates |
CCoord_reci_frac | Fractional reciprocal coordinate (i.e. non-integer hkl) |
CCoord_reci_orth | Orthogonal reciprocal coordinate (length of which is invresolsq) |
CCResolution | Resolution container |
CCSpacegroup | Spacegroup container |
CCurv_frac | Fractional (cell) curvatures, with respect to fractional u,v,w |
CCurv_map | Map coordinate curvatures, with respect to grid u,v,w |
CCurv_orth | Orthogonal (Angstom) curvatures, with respect to orthogonal x,y,z |
CCXmap | Crystallographic map container |
CDatatype_base | Reflection data type objects |
CEuler | Euler angle class |
CEuler_ccp4 | Euler_ccp4 angle class |
CFFTmap | FFTmap: P1 map with symmetry used for calculating FFTs |
CFFTmap_base | |
CFFTmap_p1 | FFTmap_p1: low level P1 map used for calculating FFTs |
CFFTmap_sparse_p1_base | Base type for sparse P1 fft maps |
CFFTmap_sparse_p1_hx | FFTmap_sparse_p1_hx: low level sparse P1 map used for calculating FFTs |
CFFTmap_sparse_p1_xh | FFTmap_sparse_p1_xh: low level sparse P1 map used for calculating FFTs |
CGeneric_ordinal | Generic ordinal gernerator |
CGrad_frac | Fractional (cell) gradient, with respect to fractional u,v,w |
CGrad_map | Map coordinate gradient, with respect to grid u,v,w |
CGrad_orth | Orthogonal (Angstom) gradient, with respect to orthogonal x,y,z |
CGrid | Generic grid |
CGrid_range | Grid range class: defines array limits for a grid |
CGrid_sampling | Grid sampling of a unit cell |
CHistogram | General histogram class |
CHKL | Reflection 'Miller' index |
CHKL_class | Reflection class |
CHKL_data | HKL_data<> |
CHKL_data_base | HKL_data_base |
►CHKL_data_cacheobj | |
CKey | |
►CHKL_info | HKL list container and tree root |
CHKL_reference_base | HKL reference base class |
CHKL_reference_coord | HKL reference with coord-like behaviour |
CHKL_reference_index | HKL reference with index-like behaviour |
►CHKL_lookup | Fast reflection lookup object |
Chlookup | Lookup on h |
Cklookup | Lookup on k |
Cllookup | Lookup on l |
CHKL_sampling | HKL sampling of reciprocal space |
CInterp_cubic | Wrapper class for third-order (cubic) interpolation fns |
CInterp_linear | Wrapper class for first-order (linear) interpolation fns |
CInterp_nearest | Wrapper class for zeroth-order (nearest neighbour) interpolation fns |
CIsymop | Integerised symmetry matrix |
CLogPhaseProb | Log phase probability distribution object |
CMap_index_sort | Generic map sorting class |
CMap_stats | Generic map statistics class |
CMat33 | 3x3-matrix class |
CMat33sym | Compressed form for 3x3 symmetric matrix class |
CMatrix | General matrix class: like Array2d but with numerical methods |
CMessage | Message handler class |
CMessage_base | Base type for messages |
CMessage_ctor | Constructor message (level = 2) |
CMessage_dtor | Destructor message (level = 2) |
CMessage_fatal | Fatal message (level = 9) |
CMessage_generic | Generic message |
CMessage_info | Info message (level = 1) |
CMessage_warn | Warning message (level = 5) |
CMetric_tensor | Metric tensor |
CMutex | Mutex class: used for locking and unlocking shared resources |
CNX_operator | NX_operator: non-crystal map operator |
CNXmap | NXmap<T>: actual non-crystallographic map class |
►CNXmap_base | NXmap_base: base for non-crystallographic map class |
CMap_reference_base | Map reference base class |
CMap_reference_coord | Map reference with coordinate-like behaviour |
CMap_reference_index | Map reference with index-like behaviour |
CNXmap_operator | NXmap_operator: non-crystal map operator referencing a particular NXmap |
►CObjectCache | Object Cache manager |
CReference | ObjectCache reference class |
CPolar_ccp4 | Polar_ccp4 angle class |
CProb_phi_2d | 2-d angular probability distibution class |
CProperty | Template for a property holding an arbitrary type |
CProperty_base | Base class for properties of arbitrary types |
CPropertyManager | Class for holding a list of labelled properties of arbitrary types |
CRamachandran | Ramachandran plot class |
CRange | Range - upper and lower bounds of some type |
CRange_sampling | Range sampling: discrete sampling of a real range |
CResolution | Resolution in angstroms |
CResolution_ordinal | Resolution ordinal gernerator |
CResolutionFn | 2nd order resolution function evaluator |
CResolutionFn_nonlinear | 2nd order resolution function evaluator |
CRotation | Rotation class |
CRTop | Rotation-translation operator |
CRTop_frac | Fractional operator class |
CRTop_orth | Orthogonal operator class |
CSpacegroup | Spacegroup object |
CSpgr_cacheobj | |
►CSpgr_descr | Spacegroup description |
CSymop_codes | Vector of symop codes and associated methods |
CString | String extension with simple parsing methods |
CSymop | Crystallographic symmetry operator |
CSymop_code | Compressed encoded symmetry operator |
►CTargetFn_base | Abstract base class for least-squares resolution function target functions |
CRderiv | Object holding the residual function and first two derivatives |
CTargetFn_meanEnth | Simple mean |E|n target |
CTargetFn_meanFnth | Simple mean |F|n target |
CTargetFn_scaleEsq | |E|2 scaling target |
CTargetFn_scaleF1F2 | |F|2 scaling target |
CTargetFn_scaleI1I2 | |
CTargetFn_scaleLogF1F2 | Log |F|2 scaling target |
CTargetFn_scaleLogI1I2 | Log |I| scaling target |
CTargetFn_sigmaa | |
CTargetFn_sigmaa_omegaa | |
CTest_base | Base class for clipper self-test classes |
CTest_core | |
CThread_base | Thread base class: Override this to create new threads |
CU_aniso_frac | Anisotropic fractional atomic displacement parameters |
CU_aniso_orth | Anisotropic orthogonal atomic displacement parameters |
CUtil | Utility class |
CVec3 | 3-vector class |
CXmap | Xmap<T>: actual crystallographic map class |
►CXmap_base | Xmap_base: base for crystallographic map class |
CMap_reference_base | Map reference base class |
CMap_reference_coord | Map reference with coordinate-like behaviour |
CMap_reference_index | Map reference with index-like behaviour |
►CXmap_cacheobj | |
CKey | |