Clustal Omega  1.0.3
src/clustal/hhalign_wrapper.h
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00001 /*********************************************************************
00002  * Clustal Omega - Multiple sequence alignment
00003  *
00004  * Copyright (C) 2010 University College Dublin
00005  *
00006  * Clustal-Omega is free software; you can redistribute it and/or
00007  * modify it under the terms of the GNU General Public License as
00008  * published by the Free Software Foundation; either version 2 of the
00009  * License, or (at your option) any later version.
00010  *
00011  * This file is part of Clustal-Omega.
00012  *
00013  ********************************************************************/
00014 
00015 /*
00016  *  RCS $Id: hhalign_wrapper.h 259 2011-08-04 15:14:30Z fabian $
00017  */
00018 
00019 
00020 extern double
00021 HHalignWrapper(mseq_t *mseq, int *piOrderLR,
00022                double *pdSeqWeights, int iNodeCount,
00023                hmm_light *prHMMList, int iHMMCount,
00024                int iProfProfSeparator, hhalign_para rHhalignPara);
00025 void
00026 SanitiseUnknown(mseq_t *mseq);