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Table Of Contents
Examples
Quick Start
Preprocessing
Gradients & Spheres
Brain Extraction
SNR estimation
Reslice
Reconstruction
Constrained Spherical Deconvolution
Simple Harmonic Oscillator based Reconstruction and Estimation
Diffusion Tensor Imaging
Q-Ball Constant Solid Angle
Diffusion Spectrum Imaging
Generalized Q-Sampling Imaging
DSI with Deconvolution
Fiber tracking
Streamline analysis
Segmentation
Streamline Clustering
Brain Segmentation
Simulations
Multiprocessing
File Formats
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A note about the examples
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Examples
¶
A note about the examples
Quick Start
¶
Getting started with Dipy
Tracking Quick Start
Preprocessing
¶
Gradients & Spheres
¶
Gradients and Spheres
Brain Extraction
¶
Brain segmentation with median_otsu
SNR estimation
¶
SNR estimation for Diffusion-Weighted Images
Reslice
¶
Reslice diffusion datasets
Reconstruction
¶
Constrained Spherical Deconvolution
¶
Reconstruction with Constrained Spherical Deconvolution
Simple Harmonic Oscillator based Reconstruction and Estimation
¶
Continuous and analytical diffusion signal modelling with 3D-SHORE
Calculate SHORE scalar maps
Diffusion Tensor Imaging
¶
Reconstruction of the diffusion signal with the Tensor model
Using the RESTORE algorithm for robust tensor fitting
Q-Ball Constant Solid Angle
¶
Reconstruct with Constant Solid Angle (Q-Ball)
Diffusion Spectrum Imaging
¶
Reconstruct with Diffusion Spectrum Imaging
Calculate DSI-based scalar maps
Generalized Q-Sampling Imaging
¶
Reconstruct with Generalized Q-Sampling Imaging
DSI with Deconvolution
¶
DSI Deconvolution vs DSI
Fiber tracking
¶
Deterministic Tracking with EuDX on Tensor Fields
Deterministic Tracking with EuDX on ODF Peaks
Probabilistic Tracking on ODF fields
Streamline analysis
¶
Connectivity Matrices, ROI Intersections and Density Maps
Streamline length and size reduction
Segmentation
¶
Streamline Clustering
¶
Tractography Clustering with QuickBundles
Brain Segmentation
¶
Brain segmentation with median_otsu
Simulations
¶
MultiTensor Simulation
DSI Deconvolution vs DSI
Multiprocessing
¶
Parallel reconstruction using CSD
Parallel reconstruction using Q-Ball
File Formats
¶
Read/Write streamline files
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