Identifies peptide features in raw (i.e. profile) LC-MS data.
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FeatureFinderRaw is a tool for the identification of peptide features in profile LC-MS data.
Algorithm
The underlying algorithm of the tool is equivalent to that of SILACAnalyzer.
The command line parameters of this tool are:
INI file documentation of this tool:
Parameter Tuning
input:
standard output:
optional output:
out_clusters [*.consensusXML] - contains the complete set of data points passing the filters
The results of an analysis can be easily visualized within TOPPView. Simply load *.consensusXML and *.featureXML as layers over the original *.mzML.
Parameters in section algorithm:
OpenMS / TOPP release 1.11.1 | Documentation generated on Sun Sep 7 2014 06:42:38 using doxygen 1.8.8 |