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MascotXMLHandler Member List

This is the complete list of members for MascotXMLHandler, including all inherited members.

ActionMode enum nameXMLHandler
actual_peptide_evidence_MascotXMLHandlerprivate
actual_peptide_hit_MascotXMLHandlerprivate
actual_protein_hit_MascotXMLHandlerprivate
actual_query_MascotXMLHandlerprivate
actual_title_MascotXMLHandlerprivate
asBool_(const String &in)XMLHandlerinlineprotected
asDateTime_(String date_string)XMLHandlerinlineprotected
asDouble_(const String &in)XMLHandlerinlineprotected
asFloat_(const String &in)XMLHandlerinlineprotected
asInt_(const String &in)XMLHandlerinlineprotected
asInt_(const XMLCh *in)XMLHandlerinlineprotected
asUInt_(const String &in)XMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
character_buffer_MascotXMLHandlerprivate
characters(const XMLCh *const chars, const XMLSize_t)MascotXMLHandlervirtual
cv_terms_XMLHandlerprotected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)XMLHandlerinlineprotected
date_MascotXMLHandlerprivate
date_time_string_MascotXMLHandlerprivate
endElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname)MascotXMLHandlervirtual
equal_(const XMLCh *a, const XMLCh *b) const XMLHandlerinlineprotected
error(const xercesc::SAXParseException &exception)XMLHandler
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const XMLHandler
error_message_XMLHandlermutableprotected
errorString()XMLHandler
fatalError(const xercesc::SAXParseException &exception)XMLHandler
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const XMLHandler
file_XMLHandlerprotected
id_data_MascotXMLHandlerprivate
identifier_MascotXMLHandlerprivate
LOAD enum valueXMLHandler
major_version_MascotXMLHandlerprivate
MascotXMLHandler(ProteinIdentification &protein_identification, std::vector< PeptideIdentification > &identifications, const String &filename, std::map< String, std::vector< AASequence > > &peptides, const RTMapping &rt_mapping=RTMapping(), const String &scan_regex="")MascotXMLHandler
minor_version_MascotXMLHandlerprivate
modified_peptides_MascotXMLHandlerprivate
no_rt_error_MascotXMLHandlerprivate
open_tags_XMLHandlerprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
peptide_identification_index_MascotXMLHandlerprivate
primary_scan_regexMascotXMLHandlerstatic
protein_identification_MascotXMLHandlerprivate
reset()XMLHandler
rt_mapping_MascotXMLHandlerprivate
RTMapping typedefMascotXMLHandler
scan_regex_MascotXMLHandlerprivate
search_parameters_MascotXMLHandlerprivate
sm_XMLHandlerprotected
startElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname, const xercesc::Attributes &attributes)MascotXMLHandlervirtual
STORE enum valueXMLHandler
tag_MascotXMLHandlerprivate
tags_open_MascotXMLHandlerprivate
version_XMLHandlerprotected
warning(const xercesc::SAXParseException &exception)XMLHandler
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const XMLHandler
writeTo(std::ostream &)XMLHandlervirtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const XMLHandlerprotected
writeXMLEscape(const String &to_escape)XMLHandlerinlinestatic
XMLHandler(const String &filename, const String &version)XMLHandler
~MascotXMLHandler()MascotXMLHandlervirtual
~XMLHandler()XMLHandlervirtual

OpenMS / TOPP release 2.0.0 Documentation generated on Tue Nov 1 2016 16:34:46 using doxygen 1.8.11