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OpenMS
EnzymaticDigestion
EnzymaticDigestion Member List
This is the complete list of members for
EnzymaticDigestion
, including all inherited members.
digest
(const AASequence &protein, std::vector< AASequence > &output) const
EnzymaticDigestion
EnzymaticDigestion
()
EnzymaticDigestion
EnzymaticDigestion
(const EnzymaticDigestion &rhs)
EnzymaticDigestion
Enzyme
enum name
EnzymaticDigestion
enzyme_
EnzymaticDigestion
protected
ENZYME_TRYPSIN
enum value
EnzymaticDigestion
getEnzyme
() const
EnzymaticDigestion
getEnzymeByName
(const String &name)
EnzymaticDigestion
static
getLogThreshold
() const
EnzymaticDigestion
getMissedCleavages
() const
EnzymaticDigestion
getSpecificity
() const
EnzymaticDigestion
getSpecificityByName
(const String &name)
EnzymaticDigestion
static
isCleavageSite_
(const AASequence &sequence, const AASequence::ConstIterator &p) const
EnzymaticDigestion
protected
isLogModelEnabled
() const
EnzymaticDigestion
isValidProduct
(const AASequence &protein, Size pep_pos, Size pep_length)
EnzymaticDigestion
log_model_threshold_
EnzymaticDigestion
protected
missed_cleavages_
EnzymaticDigestion
protected
model_data_
EnzymaticDigestion
protected
NamesOfEnzymes
EnzymaticDigestion
static
NamesOfSpecificity
EnzymaticDigestion
static
nextCleavageSite_
(const AASequence &sequence, AASequence::ConstIterator &p) const
EnzymaticDigestion
protected
operator=
(const EnzymaticDigestion &rhs)
EnzymaticDigestion
peptideCount
(const AASequence &protein)
EnzymaticDigestion
setEnzyme
(Enzyme enzyme)
EnzymaticDigestion
setLogModelEnabled
(bool enabled)
EnzymaticDigestion
setLogThreshold
(double threshold)
EnzymaticDigestion
setMissedCleavages
(SignedSize missed_cleavages)
EnzymaticDigestion
setSpecificity
(Specificity spec)
EnzymaticDigestion
SIZE_OF_ENZYMES
enum value
EnzymaticDigestion
SIZE_OF_SPECIFICITY
enum value
EnzymaticDigestion
SPEC_FULL
enum value
EnzymaticDigestion
SPEC_NONE
enum value
EnzymaticDigestion
SPEC_SEMI
enum value
EnzymaticDigestion
Specificity
enum name
EnzymaticDigestion
specificity_
EnzymaticDigestion
protected
use_log_model_
EnzymaticDigestion
protected
OpenMS / TOPP release 2.0.0
Documentation generated on Tue Nov 1 2016 16:34:46 using doxygen 1.8.11