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ITRAQLabeler Member List

This is the complete list of members for ITRAQLabeler, including all inherited members.

addModificationToPeptideHit_(Feature &feature, const String &modification, const Size &pos) const ITRAQLabelerprotected
BaseLabeler()BaseLabeler
channel_description_BaseLabelerprotected
channel_map_ITRAQLabelerprotected
ChannelInfo typedefITRAQLabeler
ChannelMapType typedefITRAQLabeler
check_defaults_DefaultParamHandlerprotected
consensus_BaseLabelerprotected
create()ITRAQLabelerinlinestatic
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
getChannelIntensityName(const Size channel_index) const BaseLabeler
getConsensus()BaseLabeler
getDefaultParameters() const BaseLabelervirtual
getDefaults() const DefaultParamHandler
getDescription() const BaseLabeler
getItraqIntensity_(const Feature &f, const double MS2_RT_time) const ITRAQLabelerprotected
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getProductName()ITRAQLabelerinlinestatic
getRTProfileIntensity_(const Feature &f, const double MS2_RT_time) const ITRAQLabelerprotected
getSubsections() const DefaultParamHandler
isotope_corrections_ITRAQLabelerprotected
IsotopeMatrices typedefITRAQLabeler
itraq_type_ITRAQLabelerprotected
ITRAQLabeler()ITRAQLabeler
labelPeptide_(const Feature &feature, SimTypes::FeatureMapSim &result) const ITRAQLabelerprotected
mergeFeatures_(Feature &labeled_channel_feature, const AASequence &unmodified_sequence, std::map< AASequence, Feature > &unlabeled_features_index) const ITRAQLabelerprotected
mergeProteinAccessions_(Feature &target, const Feature &source) const BaseLabelerprotected
mergeProteinIdentificationsMaps_(const SimTypes::FeatureMapSimVector &maps)BaseLabelerprotected
operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) const DefaultParamHandlervirtual
param_DefaultParamHandlerprotected
postDetectabilityHook(SimTypes::FeatureMapSimVector &)ITRAQLabelervirtual
postDigestHook(SimTypes::FeatureMapSimVector &)ITRAQLabelervirtual
postIonizationHook(SimTypes::FeatureMapSimVector &)ITRAQLabelervirtual
postRawMSHook(SimTypes::FeatureMapSimVector &)ITRAQLabelervirtual
postRawTandemMSHook(SimTypes::FeatureMapSimVector &, SimTypes::MSSimExperiment &)ITRAQLabelervirtual
postRTHook(SimTypes::FeatureMapSimVector &)ITRAQLabelervirtual
preCheck(Param &param) const ITRAQLabelervirtual
recomputeConsensus_(const SimTypes::FeatureMapSim &simulated_features)BaseLabelerprotected
registerChildren()BaseLabelerstatic
rng_BaseLabelerprotected
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setRnd(SimTypes::MutableSimRandomNumberGeneratorPtr rng)BaseLabelervirtual
setUpHook(SimTypes::FeatureMapSimVector &)ITRAQLabelervirtual
subsections_DefaultParamHandlerprotected
updateMembers_()ITRAQLabelerprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
y_labeling_efficiency_ITRAQLabelerprotected
~BaseLabeler()BaseLabelervirtual
~DefaultParamHandler()DefaultParamHandlervirtual
~ITRAQLabeler()ITRAQLabelervirtual

OpenMS / TOPP release 2.0.0 Documentation generated on Tue Nov 1 2016 16:34:46 using doxygen 1.8.11