Protein and peptide identification classes. More...
Classes | |
class | CompNovoIdentification |
run with CompNovoIdentification More... | |
class | CompNovoIdentificationBase |
run with CompNovoIdentificationBase More... | |
class | CompNovoIdentificationCID |
run with CompNovoIdentificationCID More... | |
class | AccurateMassSearchEngine |
An algorithm to search for exact mass matches from a spectrum against a database (e.g. HMDB). More... | |
class | ConsensusIDAlgorithm |
Abstract base class for all ConsensusID algorithms (that calculate a consensus from multiple ID runs). More... | |
class | ConsensusIDAlgorithmAverage |
Calculates a consensus from multiple ID runs by averaging the search scores. More... | |
class | ConsensusIDAlgorithmBest |
Calculates a consensus from multiple ID runs by taking the best search score. More... | |
class | ConsensusIDAlgorithmIdentity |
Abstract base class for ConsensusID algorithms that compare only identical sequences. More... | |
class | ConsensusIDAlgorithmPEPIons |
Calculates a consensus from multiple ID runs based on PEPs and shared ions. More... | |
class | ConsensusIDAlgorithmPEPMatrix |
Calculates a consensus from multiple ID runs based on PEPs and sequence similarities. More... | |
class | ConsensusIDAlgorithmRanks |
Calculates a consensus from multiple ID runs based on the ranks of the search hits. More... | |
class | ConsensusIDAlgorithmSimilarity |
Abstract base class for ConsensusID algorithms that take peptide similarity into account. More... | |
class | FalseDiscoveryRate |
Calculates an FDR from identifications. More... | |
class | IDDecoyProbability |
IDDecoyProbability calculates probabilities using decoy approach. More... | |
class | IDRipper |
Ripping protein/peptide identification according their file origin. More... | |
class | PILISIdentification |
This class actually implements a complete ProteinIdentification run with PILIS. More... | |
class | PILISModel |
This class implements the simulation of the spectra from PILIS. More... | |
class | PILISNeutralLossModel |
This class implements the simulation of the spectra from PILIS. More... | |
class | PILISScoring |
This class actually implements the E-value based scoring of PILIS. More... | |
Protein and peptide identification classes.
OpenMS / TOPP release 2.0.0 | Documentation generated on Tue Nov 1 2016 16:34:46 using doxygen 1.8.11 |