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paint() :
AxisPainter
,
AxisWidget
,
Spectrum1DCanvas
,
TOPPASEdge
,
TOPPASInputFileListVertex
,
TOPPASMergerVertex
,
TOPPASOutputFileListVertex
,
TOPPASToolVertex
,
TOPPASVertex
paintAllIntensities_() :
Spectrum2DCanvas
paintConsensusElement_() :
Spectrum2DCanvas
paintConsensusElements_() :
Spectrum2DCanvas
paintConvexHulls_() :
Spectrum2DCanvas
paintDots_() :
Spectrum2DCanvas
paintEvent() :
AxisWidget
,
ColorSelector
,
HistogramWidget
,
MultiGradientSelector
,
Spectrum1DCanvas
,
Spectrum2DCanvas
paintFeatureConvexHulls_() :
Spectrum2DCanvas
paintFeatureData_() :
Spectrum2DCanvas
paintGL() :
Spectrum3DOpenGLCanvas
paintGridLines_() :
Spectrum1DCanvas
,
SpectrumCanvas
paintIcon_() :
Spectrum2DCanvas
paintIdentifications_() :
Spectrum2DCanvas
paintMaximumIntensities_() :
Spectrum2DCanvas
paintPrecursorPeaks_() :
Spectrum2DCanvas
paintTraceConvexHulls_() :
Spectrum2DCanvas
Param() :
Param
ParamEditor() :
ParamEditor
ParamEditorDelegate() :
ParamEditorDelegate
ParamEntry() :
Param::ParamEntry
paramEntryToParameterInformation_() :
TOPPBase
parameterChanged() :
TOPPASVertex
ParameterInformation() :
ParameterInformation
ParamIterator() :
Param::ParamIterator
ParamNode() :
Param::ParamNode
paramToParameterInformation_() :
TOPPBase
ParamTree() :
ParamTree
ParamXMLFile() :
ParamXMLFile
ParamXMLHandler() :
ParamXMLHandler
ParentPeakMower() :
ParentPeakMower
parse() :
IMSAlphabetParser< AlphabetElementType, Container, InputSource >
,
IMSAlphabetTextParser
,
LogConfigHandler
parse_() :
XMLFile
parseAdductsFile_() :
AccurateMassSearchEngine
parseAdductString() :
AdductInfo
parseAnalysisSoftwareList_() :
MzIdentMLDOMHandler
parseCommandLine() :
Param
parseCommandLine_() :
TOPPBase
parseCvParam_() :
MzIdentMLDOMHandler
parseDBSequenceElements_() :
MzIdentMLDOMHandler
ParseError() :
ParseError
parseFooter_() :
IndexedMzMLFile
parseFormula_() :
EmpiricalFormula
parseHeader_() :
MSPFile
parseHMMModel_() :
PILISModel
parseInputElements_() :
MzIdentMLDOMHandler
parseIsotopeDistribution_() :
ElementDB
parseMappingFile_() :
AccurateMassSearchEngine
parseModRoundBrackets_() :
AASequence
parseModSquareBrackets_() :
AASequence
parseMzXMLData() :
FTPeakDetectController
parseOffsets() :
IndexedMzMLDecoder
parseParamGroup_() :
MzIdentMLDOMHandler
parsePeptideElements_() :
MzIdentMLDOMHandler
parsePeptideEvidenceElements_() :
MzIdentMLDOMHandler
parsePeptideSiblings_() :
MzIdentMLDOMHandler
parseProteinAmbiguityGroupElement_() :
MzIdentMLDOMHandler
parseProteinDetectionHypothesisElement_() :
MzIdentMLDOMHandler
parseProteinDetectionListElements_() :
MzIdentMLDOMHandler
parseRange_() :
TOPPBase
parseResidue_() :
ResidueDB
parseSpectrumIdentificationElements_() :
MzIdentMLDOMHandler
parseSpectrumIdentificationItemElement_() :
MzIdentMLDOMHandler
parseSpectrumIdentificationListElements_() :
MzIdentMLDOMHandler
parseSpectrumIdentificationProtocolElements_() :
MzIdentMLDOMHandler
parseString_() :
AASequence
parseStructMappingFile_() :
AccurateMassSearchEngine
parseTree_() :
SuffixArraySeqan
,
SuffixArrayTrypticCompressed
parseUserParam_() :
MzIdentMLDOMHandler
partition_() :
PILISCrossValidation
partitionIntoRuns_() :
MzTabFile
passes() :
DataFilters
paste() :
TOPPASScene
path() :
File
Peak() :
IMSIsotopeDistribution::Peak
Peak1D() :
Peak1D
Peak2D() :
Peak2D
PeakAlignment() :
PeakAlignment
PeakFileOptions() :
PeakFileOptions
PeakIndex() :
PeakIndex
PeakIntensityPredictor() :
PeakIntensityPredictor
PeakMarker() :
PeakMarker
peakPairScore_() :
PeakAlignment
PeakPickerCWT() :
PeakPickerCWT
PeakPickerHiRes() :
PeakPickerHiRes
PeakPickerIterative() :
PeakPickerIterative
PeakPickerMaxima() :
PeakPickerMaxima
PeakPickerMRM() :
PeakPickerMRM
PeakPickerSH() :
PeakPickerSH
peakselectionIsAllowed_() :
MRMFragmentSelection
PeakShape() :
PeakShape
PeakSpectrumCompareFunctor() :
PeakSpectrumCompareFunctor
PeakWidthEstimator() :
PeakWidthEstimator
PenaltyFactors() :
PenaltyFactors
PenaltyFactorsIntensity() :
PenaltyFactorsIntensity
PepIterator() :
PepIterator
PepNovoInfile() :
PepNovoInfile
PepNovoOutfile() :
PepNovoOutfile
Peptide() :
PILISCrossValidation::Peptide
,
Peptide
PeptideAndProteinQuant() :
PeptideAndProteinQuant
peptideCount() :
EnzymaticDigestion
PeptideData() :
PeptideAndProteinQuant::PeptideData
PeptideEvidence() :
PeptideEvidence
PeptideHit() :
PeptideHit
PeptideHitVisualizer() :
PeptideHitVisualizer
PeptideIdentification() :
PeptideIdentification
PeptideIdentificationVisualizer() :
PeptideIdentificationVisualizer
peptideMassRule_() :
IsotopeWaveletTransform< PeakType >
peptideScore() :
AScore
peptideSimilarityFilter() :
MultiplexFiltering
PepXMLFile() :
PepXMLFile
PepXMLFileMascot() :
PepXMLFileMascot
performAlignment() :
Spectrum1DCanvas
,
Spectrum1DWidget
performCrossValidation() :
SVMWrapper
performExtraction() :
OpenSwathWorkflow
performRTNormalization() :
OpenSwathWorkflow
Permut() :
CompNovoIdentificationBase::Permut
permute_() :
CompNovoIdentificationBase
pick() :
PeakPickerCWT
,
PeakPickerHiRes
,
PeakPickerIterative
,
PeakPickerMaxima
,
PeakPickerSH
pickAndCalibrate() :
TOFCalibration
pickChromatogram() :
PeakPickerMRM
pickChromatogram_() :
PeakPickerMRM
pickChromatogramCrawdad_() :
PeakPickerMRM
pickExperiment() :
MRMFeatureFinderScoring
,
PeakPickerCWT
,
PeakPickerHiRes
,
PeakPickerIterative
,
PeakPickerSH
pickRecenterPeaks_() :
PeakPickerIterative
pickTransitionGroup() :
MRMTransitionGroupPicker
PILISCrossValidation() :
PILISCrossValidation
PILISIdentification() :
PILISIdentification
PILISModel() :
PILISModel
PILISModelGenerator() :
PILISModelGenerator
PILISNeutralLossModel() :
PILISNeutralLossModel
PILISScoring() :
PILISScoring
pipelineDroppedOnWidget() :
TOPPASWidget
pipelineErrorSlot() :
TOPPASScene
pipelineExecutionFailed() :
TOPPASScene
PlainMSDataWritingConsumer() :
PlainMSDataWritingConsumer
plotCombinedSpectra() :
ClusteredMS2ConsensusSpectrum
plotTargetDecoyEstimation() :
PosteriorErrorProbabilityModel
PointerComparator() :
PointerComparator< Cmp >
pointerComparator() :
PointerComparator< Cmp >
PointerComparator() :
PointerComparator< Cmp >
polar() :
AAIndex
pop_back() :
ConstRefVector< ContainerT >
populateChromatogramsWithData() :
MzMLHandler< MapType >
populateChromatogramsWithData_() :
MzMLHandler< MapType >
populateMetaData_() :
SwathFile
populatePeptideRTMap_() :
ChromatogramExtractor
populateSpectraWithData() :
MzMLHandler< MapType >
populateSpectraWithData_() :
MzMLHandler< MapType >
,
MzXMLHandler< MapType >
PoseClusteringAffineSuperimposer() :
PoseClusteringAffineSuperimposer
PoseClusteringShiftSuperimposer() :
PoseClusteringShiftSuperimposer
position() :
MultiGradient
,
SparseVector< Value >::SparseVectorConstIterator
,
SparseVector< Value >::SparseVectorConstReverseIterator
,
SparseVector< Value >::SparseVectorIterator
,
SparseVector< Value >::SparseVectorReverseIterator
positionsAndBlacklistFilter() :
MultiplexFiltering
positionScore_() :
FeatureFinderAlgorithmPicked
Postcondition() :
Postcondition
postDetectabilityHook() :
BaseLabeler
,
ICPLLabeler
,
ITRAQLabeler
,
LabelFreeLabeler
,
O18Labeler
,
SILACLabeler
postDigestHook() :
BaseLabeler
,
ICPLLabeler
,
ITRAQLabeler
,
LabelFreeLabeler
,
O18Labeler
,
SILACLabeler
PosteriorErrorProbabilityModel() :
PosteriorErrorProbabilityModel
postIonizationHook() :
BaseLabeler
,
ICPLLabeler
,
ITRAQLabeler
,
LabelFreeLabeler
,
O18Labeler
,
SILACLabeler
postProcessHits_() :
SimpleSearchEngine
postRawMSHook() :
BaseLabeler
,
ICPLLabeler
,
ITRAQLabeler
,
LabelFreeLabeler
,
O18Labeler
,
SILACLabeler
postRawTandemMSHook() :
BaseLabeler
,
ICPLLabeler
,
ITRAQLabeler
,
LabelFreeLabeler
,
O18Labeler
,
SILACLabeler
postRTHook() :
BaseLabeler
,
ICPLLabeler
,
ITRAQLabeler
,
LabelFreeLabeler
,
O18Labeler
,
SILACLabeler
precalculatedColorAt() :
MultiGradient
precalculatedColorByIndex() :
MultiGradient
precalculatedColorIndex() :
MultiGradient
precalculatedColorIndex_() :
Spectrum2DCanvas
precalculatedSize() :
MultiGradient
preCheck() :
BaseLabeler
,
ICPLLabeler
,
ITRAQLabeler
,
LabelFreeLabeler
,
O18Labeler
,
SILACLabeler
PrecisionWrapper() :
PrecisionWrapper< FloatingPointType >
preComputeExpensiveFunctions_() :
IsotopeWavelet
Precondition() :
Precondition
Precursor() :
Precursor
PrecursorIonSelection() :
PrecursorIonSelection
PrecursorIonSelectionPreprocessing() :
PrecursorIonSelectionPreprocessing
PrecursorVisualizer() :
PrecursorVisualizer
predict() :
PeakIntensityPredictor
,
SVMWrapper
predictContaminantsRT() :
RTSimulation
predictDetectabilities() :
DetectabilitySimulation
Prediction() :
Prediction
predictRT() :
RTSimulation
preferencesChange() :
SpectrumCanvas
preferencesDialog() :
TOPPASBase
,
TOPPViewBase
prefix() :
String
,
StringUtils
PrefixInfo_() :
FuzzyStringComparator::PrefixInfo_
prepare_coordinates() :
ChromatogramExtractor
,
OpenSwathWorkflow
prepare_coordinates_wrap() :
OpenSwathWorkflow
prepareAlign_() :
MapAlignmentAlgorithmSpectrumAlignment
prepareFit_() :
EmgScoring
prepareLine() :
OpenSwathTSVWriter
prepareMasterContainer_() :
MRMTransitionGroupPicker
prepareProteinPeptideMaps_() :
MRMFeatureFinderScoring
prepareResize() :
TOPPASEdge
prepareSpectra_() :
ChromatogramExtractor
preprocess() :
SpectraSTSimilarityScore
preprocess_() :
ConsensusIDAlgorithmIdentity
,
ConsensusIDAlgorithmRanks
preprocessDataPoints_() :
TransformationModelInterpolated
preprocessSpectra_() :
SimpleSearchEngine
primaryProteins_() :
ProteinResolver
print() :
SparseVector< Value >
print_profile() :
LCElutionPeak
printEdgesOfConnectedFeatures_() :
FeatureDeconvolution
printStatistic() :
SuffixArray
,
SuffixArraySeqan
,
SuffixArrayTrypticCompressed
printToVoid_() :
SVMWrapper
printUsage_() :
TOPPBase
process_MS1_level_data_structure() :
FTPeakDetectController
process_MS2_level_data_structure() :
FTPeakDetectController
processChromatogram_() :
MSDataWritingConsumer
,
NoopMSDataWritingConsumer
,
PlainMSDataWritingConsumer
ProcessData() :
ProcessData
processFinished() :
TOPPASScene
processIntensities() :
BackgroundIntensityBin
processIntensityMaps() :
BackgroundControl
processMSPeaks() :
ProcessData
processMZFeatureVector() :
MS1FeatureMerger
processSpectrum_() :
MSDataWritingConsumer
,
NoopMSDataWritingConsumer
,
PlainMSDataWritingConsumer
Product() :
Product
ProductModel() :
ProductModel< 2 >
ProductVisualizer() :
ProductVisualizer
ProgressLogger() :
ProgressLogger
projectionInfo() :
Spectrum2DWidget
projectionsVisible() :
Spectrum2DWidget
proportionsActivated() :
SaveImageDialog
Protein() :
Protein
ProteinData() :
PeptideAndProteinQuant::ProteinData
ProteinGroup() :
ProteinIdentification::ProteinGroup
ProteinHit() :
ProteinHit
ProteinHitVisualizer() :
ProteinHitVisualizer
ProteinIdentification() :
ProteinIdentification
ProteinIdentificationVisualizer() :
ProteinIdentificationVisualizer
ProteinInference() :
ProteinInference
ProteinResolver() :
ProteinResolver
ProtonDistributionModel() :
ProtonDistributionModel
ProtXMLFile() :
ProtXMLFile
pseudoreversePeptide() :
MRMDecoy
PSLPFormulation() :
PSLPFormulation
PSProteinInference() :
PSProteinInference
PTMXMLFile() :
PTMXMLFile
PTMXMLHandler() :
PTMXMLHandler
Publication() :
Publication
PuritySate_() :
IsobaricChannelExtractor::PuritySate_
push2Box_() :
IsotopeWaveletTransform< PeakType >
push2TmpBox_() :
IsotopeWaveletTransform< PeakType >
push_back() :
ConstRefVector< ContainerT >
,
IMSAlphabet
,
SparseVector< Value >
PValue_() :
LabeledPairFinder
OpenMS / TOPP release 2.0.0
Documentation generated on Tue Nov 1 2016 16:34:46 using doxygen 1.8.11