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EnzymaticDigestion Member List

This is the complete list of members for EnzymaticDigestion, including all inherited members.

digest(const AASequence &protein, std::vector< AASequence > &output) const EnzymaticDigestion
EnzymaticDigestion()EnzymaticDigestion
EnzymaticDigestion(const EnzymaticDigestion &rhs)EnzymaticDigestion
Enzyme enum nameEnzymaticDigestion
enzyme_EnzymaticDigestionprotected
ENZYME_TRYPSIN enum valueEnzymaticDigestion
getEnzyme() const EnzymaticDigestion
getEnzymeByName(const String &name)EnzymaticDigestionstatic
getLogThreshold() const EnzymaticDigestion
getMissedCleavages() const EnzymaticDigestion
getSpecificity() const EnzymaticDigestion
getSpecificityByName(const String &name)EnzymaticDigestionstatic
isCleavageSite_(const AASequence &sequence, const AASequence::ConstIterator &p) const EnzymaticDigestionprotected
isLogModelEnabled() const EnzymaticDigestion
isValidProduct(const AASequence &protein, Size pep_pos, Size pep_length)EnzymaticDigestion
log_model_threshold_EnzymaticDigestionprotected
missed_cleavages_EnzymaticDigestionprotected
model_data_EnzymaticDigestionprotected
NamesOfEnzymesEnzymaticDigestionstatic
NamesOfSpecificityEnzymaticDigestionstatic
nextCleavageSite_(const AASequence &sequence, AASequence::ConstIterator &p) const EnzymaticDigestionprotected
operator=(const EnzymaticDigestion &rhs)EnzymaticDigestion
peptideCount(const AASequence &protein)EnzymaticDigestion
setEnzyme(Enzyme enzyme)EnzymaticDigestion
setLogModelEnabled(bool enabled)EnzymaticDigestion
setLogThreshold(double threshold)EnzymaticDigestion
setMissedCleavages(SignedSize missed_cleavages)EnzymaticDigestion
setSpecificity(Specificity spec)EnzymaticDigestion
SIZE_OF_ENZYMES enum valueEnzymaticDigestion
SIZE_OF_SPECIFICITY enum valueEnzymaticDigestion
SPEC_FULL enum valueEnzymaticDigestion
SPEC_NONE enum valueEnzymaticDigestion
SPEC_SEMI enum valueEnzymaticDigestion
Specificity enum nameEnzymaticDigestion
specificity_EnzymaticDigestionprotected
use_log_model_EnzymaticDigestionprotected

OpenMS / TOPP release 2.0.0 Documentation generated on Tue Nov 1 2016 16:34:46 using doxygen 1.8.11