Several helpers to convert OpenMS datastructures to structures that implement the OpenSWATH interfaces. More...
#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h>
Static Public Member Functions | |
static void | convertToOpenMSSpectrum (const OpenSwath::SpectrumPtr sptr, OpenMS::MSSpectrum<> &spectrum) |
Convert a SpectrumPtr to an OpenMS Spectrum. More... | |
static OpenSwath::SpectrumPtr | convertToSpectrumPtr (const OpenMS::MSSpectrum<> &spectrum) |
Convert an OpenMS Spectrum to an SpectrumPtr. More... | |
static void | convertToOpenMSChromatogram (OpenMS::MSChromatogram<> &chromatogram, const OpenSwath::ChromatogramPtr cptr) |
Convert a ChromatogramPtr to an OpenMS Chromatogram. More... | |
static void | convertTargetedExp (const OpenMS::TargetedExperiment &transition_exp_, OpenSwath::LightTargetedExperiment &transition_exp) |
convert from the OpenMS TargetedExperiment to the LightTargetedExperiment More... | |
static void | convertTargetedPeptide (const TargetedExperiment::Peptide &pep, OpenSwath::LightPeptide &p) |
convert from the OpenMS TargetedExperiment Peptide to the LightTargetedExperiment Peptide More... | |
static void | convertPeptideToAASequence (const OpenSwath::LightPeptide &peptide, AASequence &aa_sequence) |
convert from the LightPeptide to an OpenMS AASequence (with correct modifications) More... | |
Several helpers to convert OpenMS datastructures to structures that implement the OpenSWATH interfaces.
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convert from the LightPeptide to an OpenMS AASequence (with correct modifications)
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convert from the OpenMS TargetedExperiment to the LightTargetedExperiment
Referenced by OpenSwathWorkflow::RTNormalization().
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convert from the OpenMS TargetedExperiment Peptide to the LightTargetedExperiment Peptide
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Convert a ChromatogramPtr to an OpenMS Chromatogram.
Referenced by ChromatogramExtractor::return_chromatogram(), and OpenSwathWorkflow::scoreAllChromatograms().
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Convert a SpectrumPtr to an OpenMS Spectrum.
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Convert an OpenMS Spectrum to an SpectrumPtr.
OpenMS / TOPP release 2.0.0 | Documentation generated on Tue Nov 1 2016 16:34:46 using doxygen 1.8.11 |