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SpectrumCheapDPCorr.h
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35 #ifndef OPENMS_COMPARISON_SPECTRA_SPECTRUMCHEAPDPCORR_H
36 #define OPENMS_COMPARISON_SPECTRA_SPECTRUMCHEAPDPCORR_H
37 
41 
42 namespace OpenMS
43 {
44 
58  class OPENMS_DLLAPI SpectrumCheapDPCorr :
60  {
61 public:
62 
63  // @name Constructors and Destructors
64  // @{
67 
70 
72  virtual ~SpectrumCheapDPCorr();
73  // @}
74 
75  // @name Operators
76  // @{
78  SpectrumCheapDPCorr & operator=(const SpectrumCheapDPCorr & source);
79 
80  double operator()(const PeakSpectrum & a, const PeakSpectrum & b) const;
81 
82  double operator()(const PeakSpectrum & a) const;
83  // @}
84 
85  // @name Accessors
86  // @{
89 
91  static const String getProductName()
92  {
93  return "SpectrumCheapDPCorr";
94  }
95 
97  const PeakSpectrum & lastconsensus() const;
98 
100  Map<UInt, UInt> getPeakMap() const;
101 
103  void setFactor(double f);
104  // @}
105 
106 private:
107 
109  double dynprog_(const PeakSpectrum &, const PeakSpectrum &, int, int, int, int) const;
110 
112  double comparepeaks_(double posa, double posb, double inta, double intb) const;
113 
114  static const String info_;
115 
118 
121 
123  mutable double factor_;
124 
127  };
128 
129 }
130 #endif //OPENMS_COMPARISON_SPECTRA_SPECTRUMCHEAPDPCORR_H
A more convenient string class.
Definition: String.h:57
static const String getProductName()
Definition: SpectrumCheapDPCorr.h:91
bool keeppeaks_
should peaks with no alignment partner be kept in the consensus?
Definition: SpectrumCheapDPCorr.h:120
static const String info_
Definition: SpectrumCheapDPCorr.h:114
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
static PeakSpectrumCompareFunctor * create()
Definition: SpectrumCheapDPCorr.h:88
PeakSpectrum lastconsensus_
consensus spectrum of the last comparison
Definition: SpectrumCheapDPCorr.h:117
Base class for compare functors of spectra, that return a similarity value for two spectra...
Definition: PeakSpectrumCompareFunctor.h:53
Map< UInt, UInt > peak_map_
last peak map
Definition: SpectrumCheapDPCorr.h:126
double factor_
weighting factor for the next consensus spectrum
Definition: SpectrumCheapDPCorr.h:123
Map class based on the STL map (containing several convenience functions)
Definition: Map.h:51
SpectrumCheapDPCorr calculates an optimal alignment on stick spectra.
Definition: SpectrumCheapDPCorr.h:58

OpenMS / TOPP release 2.0.0 Documentation generated on Tue Nov 1 2016 16:34:46 using doxygen 1.8.11