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MascotXMLFile.h
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34 
35 #ifndef OPENMS_FORMAT_MASCOTXMLFILE_H
36 #define OPENMS_FORMAT_MASCOTXMLFILE_H
37 
40 #include <OpenMS/FORMAT/XMLFile.h>
43 
44 
45 namespace OpenMS
46 {
47  class ProteinIdentification;
48 
57  class OPENMS_DLLAPI MascotXMLFile :
58  public Internal::XMLFile
59  {
60 public:
61 
63 
65  MascotXMLFile();
66 
82  void load(const String& filename,
83  ProteinIdentification& protein_identification,
84  std::vector<PeptideIdentification>& id_data,
85  const RTMapping& rt_mapping = RTMapping(),
86  const String& scan_regex = "");
87 
104  void load(const String& filename,
105  ProteinIdentification& protein_identification,
106  std::vector<PeptideIdentification>& id_data,
107  std::map<String, std::vector<AASequence> >& peptides,
108  const RTMapping& rt_mapping = RTMapping(),
109  const String& scan_regex = "");
110 
120  static void generateRTMapping(const MSExperiment<>::ConstIterator begin,
122  RTMapping& rt_mapping);
123 
124  };
125 
126 } // namespace OpenMS
127 
128 #endif // OPENMS_FORMAT_MASCOTXMLFILE_H
Representation of a protein identification run.
Definition: ProteinIdentification.h:61
A more convenient string class.
Definition: String.h:57
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
In-Memory representation of a mass spectrometry experiment.
Definition: MSExperiment.h:69
Base class for loading/storing XML files that have a handler derived from XMLHandler.
Definition: XMLFile.h:53
Internal::MascotXMLHandler::RTMapping RTMapping
Definition: MascotXMLFile.h:62
Map class based on the STL map (containing several convenience functions)
Definition: Map.h:51
Used to load MascotXML files.
Definition: MascotXMLFile.h:57

OpenMS / TOPP release 2.0.0 Documentation generated on Tue Nov 1 2016 16:34:46 using doxygen 1.8.11