Search parameters of the DB search. More...
#include <OpenMS/METADATA/ProteinIdentification.h>
Public Member Functions | |
SearchParameters () | |
bool | operator== (const SearchParameters &rhs) const |
bool | operator!= (const SearchParameters &rhs) const |
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MetaInfoInterface () | |
constructor More... | |
MetaInfoInterface (const MetaInfoInterface &rhs) | |
copy constructor More... | |
~MetaInfoInterface () | |
destructor More... | |
MetaInfoInterface & | operator= (const MetaInfoInterface &rhs) |
assignment operator More... | |
bool | operator== (const MetaInfoInterface &rhs) const |
Equality operator. More... | |
bool | operator!= (const MetaInfoInterface &rhs) const |
Equality operator. More... | |
const DataValue & | getMetaValue (const String &name) const |
returns the value corresponding to a string More... | |
const DataValue & | getMetaValue (UInt index) const |
returns the value corresponding to an index More... | |
bool | metaValueExists (const String &name) const |
returns if this MetaInfo is set More... | |
bool | metaValueExists (UInt index) const |
returns if this MetaInfo is set More... | |
void | setMetaValue (const String &name, const DataValue &value) |
sets the DataValue corresponding to a name More... | |
void | setMetaValue (UInt index, const DataValue &value) |
sets the DataValue corresponding to an index More... | |
void | removeMetaValue (const String &name) |
Removes the DataValue corresponding to name if it exists. More... | |
void | removeMetaValue (UInt index) |
Removes the DataValue corresponding to index if it exists. More... | |
void | getKeys (std::vector< String > &keys) const |
fills the given vector with a list of all keys for which a value is set More... | |
void | getKeys (std::vector< UInt > &keys) const |
fills the given vector with a list of all keys for which a value is set More... | |
bool | isMetaEmpty () const |
returns if the MetaInfo is empty More... | |
void | clearMetaInfo () |
removes all meta values More... | |
Public Attributes | |
String | db |
The used database. More... | |
String | db_version |
The database version. More... | |
String | taxonomy |
The taxonomy restriction. More... | |
String | charges |
The allowed charges for the search. More... | |
PeakMassType | mass_type |
Mass type of the peaks. More... | |
std::vector< String > | fixed_modifications |
Used fixed modifications. More... | |
std::vector< String > | variable_modifications |
Allowed variable modifications. More... | |
DigestionEnzyme | enzyme |
The enzyme used for cleavage. More... | |
UInt | missed_cleavages |
The number of allowed missed cleavages. More... | |
double | peak_mass_tolerance |
Mass tolerance of fragment ions (Dalton) More... | |
double | precursor_tolerance |
Mass tolerance of precursor ions (Dalton) More... | |
Additional Inherited Members | |
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static MetaInfoRegistry & | metaRegistry () |
returns a reference to the MetaInfoRegistry More... | |
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void | createIfNotExists_ () |
creates the MetaInfo object if it does not exist More... | |
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MetaInfo * | meta_ |
pointer to the MetaInfo object. 0 by default More... | |
Search parameters of the DB search.
SearchParameters | ( | ) |
bool operator!= | ( | const SearchParameters & | rhs | ) | const |
bool operator== | ( | const SearchParameters & | rhs | ) | const |
String charges |
The allowed charges for the search.
String db |
The used database.
String db_version |
The database version.
DigestionEnzyme enzyme |
The enzyme used for cleavage.
std::vector<String> fixed_modifications |
Used fixed modifications.
PeakMassType mass_type |
Mass type of the peaks.
UInt missed_cleavages |
The number of allowed missed cleavages.
double peak_mass_tolerance |
Mass tolerance of fragment ions (Dalton)
double precursor_tolerance |
Mass tolerance of precursor ions (Dalton)
String taxonomy |
The taxonomy restriction.
std::vector<String> variable_modifications |
Allowed variable modifications.
OpenMS / TOPP release 2.0.0 | Documentation generated on Tue Nov 1 2016 16:34:46 using doxygen 1.8.11 |