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OpenMS
SuffixArrayPeptideFinder
SuffixArrayPeptideFinder Member List
This is the complete list of members for
SuffixArrayPeptideFinder
, including all inherited members.
AVERAGE
enum value
WeightWrapper
big_string_
SuffixArrayPeptideFinder
protected
FASTAEntry
typedef
SuffixArrayPeptideFinder
getCandidates
(std::vector< std::vector< std::pair< FASTAEntry, String > > > &candidates, const std::vector< double > &spec)
SuffixArrayPeptideFinder
getCandidates
(std::vector< std::vector< std::pair< FASTAEntry, String > > > &candidates, const String &DTA_file)
SuffixArrayPeptideFinder
getModificationOutputMethod
()
SuffixArrayPeptideFinder
getNumberOfModifications
() const
SuffixArrayPeptideFinder
getTags
()
SuffixArrayPeptideFinder
getTolerance
() const
SuffixArrayPeptideFinder
getUseTags
()
SuffixArrayPeptideFinder
getWeight
(const AASequence &aa) const
WeightWrapper
getWeight
(const EmpiricalFormula &ef) const
WeightWrapper
getWeight
(const Residue &r, Residue::ResidueType res_type=Residue::Full) const
WeightWrapper
getWeightMode
() const
WeightWrapper
modification_output_method_
SuffixArrayPeptideFinder
protected
MONO
enum value
WeightWrapper
sa_
SuffixArrayPeptideFinder
protected
setModificationOutputMethod
(const String &s)
SuffixArrayPeptideFinder
setNumberOfModifications
(Size number_of_mods) const
SuffixArrayPeptideFinder
setTags
(const std::vector< String > &tags)
SuffixArrayPeptideFinder
setTolerance
(const double t)
SuffixArrayPeptideFinder
setUseTags
(bool use_tags)
SuffixArrayPeptideFinder
setWeightMode
(const WEIGHTMODE mode)
WeightWrapper
SIZE_OF_WEIGHTMODE
enum value
WeightWrapper
SuffixArrayPeptideFinder
(const String &filename, const String &method, const WeightWrapper::WEIGHTMODE weight_mode=WeightWrapper::MONO)
SuffixArrayPeptideFinder
SuffixArrayPeptideFinder
(const SuffixArrayPeptideFinder &source)
SuffixArrayPeptideFinder
vToString_
(std::vector< String > v)
SuffixArrayPeptideFinder
protected
WEIGHTMODE
enum name
WeightWrapper
WeightWrapper
()
WeightWrapper
WeightWrapper
(const WEIGHTMODE weight_mode)
WeightWrapper
explicit
WeightWrapper
(const WeightWrapper &source)
WeightWrapper
~SuffixArrayPeptideFinder
()
SuffixArrayPeptideFinder
virtual
~WeightWrapper
()
WeightWrapper
virtual
OpenMS / TOPP release 2.0.0
Documentation generated on Tue Nov 1 2016 16:34:46 using doxygen 1.8.11