A map feature grouping algorithm for identified features. More...
#include <OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmIdentification.h>
Public Member Functions | |
FeatureGroupingAlgorithmIdentification () | |
Default constructor. More... | |
virtual | ~FeatureGroupingAlgorithmIdentification () |
Destructor. More... | |
virtual void | group (const std::vector< FeatureMap > &maps, ConsensusMap &out) |
Applies the algorithm. More... | |
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FeatureGroupingAlgorithm () | |
Default constructor. More... | |
virtual | ~FeatureGroupingAlgorithm () |
Destructor. More... | |
virtual void | group (const std::vector< ConsensusMap > &maps, ConsensusMap &out) |
void | transferSubelements (const std::vector< ConsensusMap > &maps, ConsensusMap &out) const |
Transfers subelements (grouped features) from input consensus maps to the result consensus map. More... | |
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DefaultParamHandler (const String &name) | |
Constructor with name that is displayed in error messages. More... | |
DefaultParamHandler (const DefaultParamHandler &rhs) | |
Copy constructor. More... | |
virtual | ~DefaultParamHandler () |
Destructor. More... | |
virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) |
Assignment operator. More... | |
virtual bool | operator== (const DefaultParamHandler &rhs) const |
Equality operator. More... | |
void | setParameters (const Param ¶m) |
Sets the parameters. More... | |
const Param & | getParameters () const |
Non-mutable access to the parameters. More... | |
const Param & | getDefaults () const |
Non-mutable access to the default parameters. More... | |
const String & | getName () const |
Non-mutable access to the name. More... | |
void | setName (const String &name) |
Mutable access to the name. More... | |
const std::vector< String > & | getSubsections () const |
Non-mutable access to the registered subsections. More... | |
Static Public Member Functions | |
static FeatureGroupingAlgorithm * | create () |
Creates a new instance of this class (for Factory) More... | |
static String | getProductName () |
Returns the product name (for the Factory) More... | |
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static void | registerChildren () |
Register all derived classes in this method. More... | |
Private Member Functions | |
FeatureGroupingAlgorithmIdentification (const FeatureGroupingAlgorithmIdentification &) | |
Copy constructor intentionally not implemented -> private. More... | |
FeatureGroupingAlgorithmIdentification & | operator= (const FeatureGroupingAlgorithmIdentification &) |
Assignment operator intentionally not implemented -> private. More... | |
Additional Inherited Members | |
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virtual void | updateMembers_ () |
This method is used to update extra member variables at the end of the setParameters() method. More... | |
void | defaultsToParam_ () |
Updates the parameters after the defaults have been set in the constructor. More... | |
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Param | param_ |
Container for current parameters. More... | |
Param | defaults_ |
Container for default parameters. This member should be filled in the constructor of derived classes! More... | |
std::vector< String > | subsections_ |
Container for registered subsections. This member should be filled in the constructor of derived classes! More... | |
String | error_name_ |
Name that is displayed in error messages during the parameter checking. More... | |
bool | check_defaults_ |
If this member is set to false no checking if parameters in done;. More... | |
bool | warn_empty_defaults_ |
If this member is set to false no warning is emitted when defaults are empty;. More... | |
A map feature grouping algorithm for identified features.
It takes many maps and searches for corresponding features. The corresponding features must be aligned, but may have small position deviations.
Default constructor.
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virtual |
Destructor.
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private |
Copy constructor intentionally not implemented -> private.
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inlinestatic |
Creates a new instance of this class (for Factory)
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virtual |
Applies the algorithm.
IllegalArgument | is thrown if less than two input maps are given. |
Implements FeatureGroupingAlgorithm.
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private |
Assignment operator intentionally not implemented -> private.
OpenMS / TOPP release 2.0.0 | Documentation generated on Tue Nov 1 2016 16:34:46 using doxygen 1.8.11 |