Package | Description |
---|---|
picard.analysis | |
picard.filter |
Modifier and Type | Method and Description |
---|---|
protected long |
CollectWgsMetrics.getBasesExcludedBy(CountingFilter filter) |
protected long |
CollectWgsMetricsFromSampledSites.getBasesExcludedBy(CountingFilter filter)
By design we want to count just those bases at the positions we care about, not across the entire read.
|
Modifier and Type | Class and Description |
---|---|
class |
CountingDuplicateFilter
Counting filter that discards reads that have been marked as duplicates.
|
class |
CountingMapQFilter
Counting filter that discards reads below a configurable mapping quality threshold.
|
class |
CountingPairedFilter
Counting filter that discards reads that are unpaired in sequencing and paired reads whose mates are not mapped.
|