public abstract class SAMRecordAndReferenceMultiLevelCollector<BEAN extends MetricBase,HKEY extends Comparable> extends MultiLevelCollector<BEAN,HKEY,SAMRecordAndReference>
UNKNOWN
Constructor and Description |
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SAMRecordAndReferenceMultiLevelCollector() |
Modifier and Type | Method and Description |
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protected SAMRecordAndReference |
makeArg(SAMRecord samRec,
ReferenceSequence refSeq) |
acceptRecord, addAllLevelsToFile, finish, getAllReadsCollector, makeAllReadCollector, makeChildCollector, makeLibraryCollector, makeReadGroupCollector, makeSampleCollector, setup
public SAMRecordAndReferenceMultiLevelCollector()
protected SAMRecordAndReference makeArg(SAMRecord samRec, ReferenceSequence refSeq)
makeArg
in class MultiLevelCollector<BEAN extends MetricBase,HKEY extends Comparable,SAMRecordAndReference>