GrammaredSequence.
expand_degenerates
()[source]¶Yield all possible definite versions of the sequence.
State: Stable as of 0.4.0.
See also
Notes
There is no guaranteed ordering to the definite sequences that are yielded.
Each definite sequence will have the same type, metadata, and positional metadata as the biological sequence.
Examples
>>> from skbio import DNA
>>> seq = DNA('TRG')
>>> seq_generator = seq.expand_degenerates()
>>> for s in sorted(seq_generator, key=str):
... s
... print('')
DNA
--------------------------
Stats:
length: 3
has gaps: False
has degenerates: False
has definites: True
GC-content: 33.33%
--------------------------
0 TAG
DNA
--------------------------
Stats:
length: 3
has gaps: False
has degenerates: False
has definites: True
GC-content: 66.67%
--------------------------
0 TGG