public interface BioUnitDataProvider
Modifier and Type | Method and Description |
---|---|
Structure |
getAsymUnit(java.lang.String pdbId)
load the asym unit, but set the info how to re-create the bio unit in the PdbHeader object
|
AtomCache |
getAtomCache() |
java.util.List<BiologicalAssemblyTransformation> |
getBioUnitTransformationList(java.lang.String pdbId,
int biolAssemblyNr)
get the data for a particular assembly, counting starts at 1...
|
int |
getNrBiolAssemblies(java.lang.String pdbId)
Returns the number of available biological assemblies.
|
boolean |
hasBiolAssembly(java.lang.String pdbId)
Does the PDB ID have biological assembly information?
|
void |
setAsymUnit(Structure asymUnit) |
void |
setAtomCache(AtomCache cache)
Set an AtomCache to use when fetching asymmetric units.
|
java.util.List<BiologicalAssemblyTransformation> getBioUnitTransformationList(java.lang.String pdbId, int biolAssemblyNr)
pdbId
- the PDB ID. E.g. 1STPbiolAssemblyNr
- the number of the assembly, the first one is nr 1. 0 refers to the asym unitint getNrBiolAssemblies(java.lang.String pdbId)
pdbId
- the PDB ID. E.g. 1STPboolean hasBiolAssembly(java.lang.String pdbId)
pdbId
- the PDB ID. E.g. 1STPStructure getAsymUnit(java.lang.String pdbId)
pdbId
- void setAsymUnit(Structure asymUnit)
void setAtomCache(AtomCache cache)
cache
- AtomCache getAtomCache()