Package | Description |
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pal.treesearch |
Modifier and Type | Class and Description |
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class |
FixedBSRDTGlobalClockModel |
class |
FixedSRDTGlobalClockModel |
class |
GlobalClockModel |
class |
MRDTGlobalClockModel |
class |
SRDTGlobalClockModel |
Modifier and Type | Method and Description |
---|---|
ConstraintModel.GroupManager |
UnconstrainedModel.getGlobalClockConstraintGrouping(java.lang.String[] leafLabelSet) |
ConstraintModel.GroupManager |
MRDTGlobalClockModel.getGlobalClockConstraintGrouping(java.lang.String[] leafLabelSet) |
ConstraintModel.GroupManager |
SRDTGlobalClockModel.getGlobalClockConstraintGrouping(java.lang.String[] leafLabelSet) |
ConstraintModel.GroupManager |
ConstraintModel.getGlobalClockConstraintGrouping(java.lang.String[] leafLabelSet)
Enquire about the clock constraint grouping of the leaf
|
ConstraintModel.GroupManager |
FixedSRDTGlobalClockModel.getGlobalClockConstraintGrouping(java.lang.String[] leafLabelSet) |
ConstraintModel.GroupManager |
GlobalClockModel.getGlobalClockConstraintGrouping(java.lang.String[] leafLabelSet) |
ConstraintModel.GroupManager |
FixedBSRDTGlobalClockModel.getGlobalClockConstraintGrouping(java.lang.String[] leafLabelSet) |
ConstraintModel.GroupManager |
GeneralConstraintGroupManager.getRelatedGroup() |
Modifier and Type | Method and Description |
---|---|
Node |
ConstrainedLeafNode.buildDescendentPALNodeES(ConstraintModel.GroupManager groupManager) |
Node |
ConstrainedNode.buildDescendentPALNodeES(ConstraintModel.GroupManager groupConstraints)
Build node with Expected Substitution Units
|
Node |
AbstractParentableConstrainedNode.buildDescendentPALNodeES(ConstraintModel.GroupManager groupManager) |
protected MolecularClockLikelihoodModel.Leaf |
AbstractLeafNode.createNewConstrainedLeafCalculator(ConstraintModel.GroupManager parentGroup) |
GeneralConstraintGroupManager |
GeneralConstraintGroupManager.Store.getConstraintGroupManager(ConstraintModel.GroupManager grouping) |
boolean |
GeneralConstraintGroupManager.isSameGroup(ConstraintModel.GroupManager queryGroup) |
void |
GroupLeader.postSetupNotify(ConstraintModel.GroupManager groupConstraints)
Tell the group leader that the groupConstraints have been set up (parameter wise),
and that internal node heights for example may be calculated
|
void |
PivotNode.postSetupNotify(ConstraintModel.GroupManager groupConstraints) |
void |
ConstrainedLeafNode.setupInternalNodeHeights(ConstraintModel.GroupManager groupConstraints) |
void |
ConstrainedNode.setupInternalNodeHeights(ConstraintModel.GroupManager groupConstraints) |
void |
AbstractParentableConstrainedNode.setupInternalNodeHeights(ConstraintModel.GroupManager groupConstraints) |
Constructor and Description |
---|
ConstrainedLeafNode(ParentableConstrainedNode parentNode,
Node peer,
double height,
GeneralConstructionTool tool,
ConstraintModel.GroupManager parentGroup) |
GeneralConstraintGroupManager(ConstraintModel.GroupManager relatedGroup) |