Package | Description |
---|---|
pal.misc |
Classes that don't fit elsewhere ;^)
|
pal.substmodel |
Classes describing substitution models, i.e.
|
Constructor and Description |
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ParameterizedDoubleBundle(MutableDouble[] parameters) |
Modifier and Type | Method and Description |
---|---|
static MutableDouble |
YangCodonModel.createKappaStore(double initialValue) |
static MutableDouble |
YangCodonModel.createKappaStore(double initialValue,
java.lang.String name) |
static MutableDouble |
YangCodonModel.createOmegaStore(double initialValue) |
static MutableDouble |
YangCodonModel.createOmegaStore(double initialValue,
java.lang.String name) |
Constructor and Description |
---|
NeutralSelectionRateMatrixGroup(MutableDouble kappaStore,
double[] freqs,
CodonTable table) |
PositiveSelectionRateMatrixGroup(MutableDouble kappaStore,
MutableDouble omegaStore,
double[] freqs,
CodonTable table) |