public class JumbledAlignment extends AbstractAlignment
IdGroup.Utils
idGroup, numSeqs, numSites
Constructor and Description |
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JumbledAlignment(Alignment raw) |
Modifier and Type | Method and Description |
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char |
getData(int seq,
int site)
sequence alignment at (sequence, site)
|
void |
jumble()
jumble sequences (rearrange input order)
|
getAlignedSequenceString, getChar, getDataType, getIdCount, getIdentifier, getLength, getSequenceCount, getSiteCount, getState, getStates, guessDataType, isGap, isUnknownState, report, setDataType, setIdentifier, toString, whichIdNumber
public JumbledAlignment(Alignment raw)
public char getData(int seq, int site)
getData
in interface Alignment
getData
in class AbstractAlignment
public void jumble()