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Hierarchy For Package pal.alignment
Package Hierarchies:
All Packages
Class Hierarchy
java.lang.Object
pal.alignment.
AbstractAlignment
(implements pal.alignment.
Alignment
, pal.misc.
IdGroup
, pal.misc.
Report
, java.io.Serializable)
pal.alignment.
BootstrappedAlignment
pal.alignment.
ConcatenatedAlignment
pal.alignment.
ConcatenatedAnnotatedAlignment
(implements pal.alignment.
AnnotationAlignment
)
pal.alignment.
GapBalancedAlignment
(implements java.io.Serializable)
pal.alignment.
IndelAlignment
pal.alignment.
IndelAnnotatedAlignment
(implements pal.alignment.
AnnotationAlignment
)
pal.alignment.
JumbledAlignment
pal.alignment.
ReadAlignment
pal.alignment.
ReadAlignmentOld
pal.alignment.
SimpleAlignment
pal.alignment.
MultiLocusAnnotatedAlignment
(implements pal.alignment.
AnnotationAlignment
)
pal.alignment.
SimpleAnnotatedAlignment
(implements pal.alignment.
AnnotationAlignment
)
pal.alignment.
SitePattern
pal.alignment.
StrippedAlignment
pal.alignment.
StrippedAnnotatedAlignment
(implements pal.alignment.
AnnotationAlignment
)
pal.alignment.
AlignmentBuilder
pal.alignment.
AlignmentGenerator.Utils
pal.alignment.
AlignmentReaders
pal.alignment.
AlignmentReaders.PhylipClustalAlignment
pal.alignment.
AlignmentReaders.UnalignedAlignment
pal.alignment.
AlignmentReceiver.BucketReceiver
(implements pal.alignment.
AlignmentReceiver
)
pal.alignment.
AlignmentReceiver.SingleReceiver
(implements pal.alignment.
AlignmentReceiver
)
pal.alignment.
AlignmentTool
pal.alignment.
AlignmentUtils
pal.alignment.
DataTranslator
pal.alignment.
Genotype
pal.alignment.
SimpleCharacterAlignment
(implements pal.alignment.
CharacterAlignment
, pal.misc.
IdGroup
, pal.misc.
Report
, java.io.Serializable)
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
pal.alignment.
AlignmentParseException
Interface Hierarchy
pal.alignment.
AlignmentGenerator
pal.alignment.
AlignmentReceiver
pal.misc.
Report
pal.alignment.
AnnotationAlignment
(also extends pal.alignment.
Alignment
)
pal.alignment.
CharacterAlignment
(also extends pal.misc.
IdGroup
, java.io.Serializable, pal.misc.
TableReport
)
java.io.Serializable
pal.alignment.
Alignment
(also extends pal.misc.
IdGroup
)
pal.alignment.
AnnotationAlignment
(also extends pal.misc.
Report
)
pal.alignment.
CharacterAlignment
(also extends pal.misc.
IdGroup
, pal.misc.
Report
, pal.misc.
TableReport
)
pal.misc.
IdGroup
pal.alignment.
Alignment
(also extends java.io.Serializable)
pal.alignment.
AnnotationAlignment
(also extends pal.misc.
Report
)
pal.alignment.
CharacterAlignment
(also extends pal.misc.
Report
, java.io.Serializable, pal.misc.
TableReport
)
pal.misc.
TableReport
pal.alignment.
CharacterAlignment
(also extends pal.misc.
IdGroup
, pal.misc.
Report
, java.io.Serializable)
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