Package | Description |
---|---|
pal.eval |
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
|
Modifier and Type | Method and Description |
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LHCalculator.Generator |
LHCalculator.Factory.createSeries(int numberOfCategories,
DataType dt) |
Modifier and Type | Method and Description |
---|---|
static UnconstrainedLikelihoodModel.Instance |
SimpleUnconstrainedLikelihoodModel.createInstance(LHCalculator.Generator base,
SubstitutionModel model)
Create a SimpleUnconstrainedLikelihoodModel instance
|
LHCalculator.External |
LHCalculator.Generator.createNewExternal(LHCalculator.Generator parentGenerator)
An obscure method, primarily used by the High Accuracy calculator
|
LHCalculator.Internal |
LHCalculator.Generator.createNewInternal(LHCalculator.Generator patentGenerator)
An obscure method, primarily used by the High Accuracy calculator
|
LHCalculator.Leaf |
LHCalculator.Generator.createNewLeaf(int[] patternStateMatchup,
int numberOfPatterns,
LHCalculator.Generator parentGenerator) |
Constructor and Description |
---|
SimpleLeafCalculator(int[] patternStateMatchup,
int numberOfPatterns,
int numberOfStates,
int numberOfCategories,
LHCalculator.Generator parent) |