public class SaturatedSingleSplitDistribution extends java.lang.Object implements SingleSplitDistribution
Title: SaturatedSingleSplitDistribution
Description: A model
Copyright: Copyright (c) 2003
Company:
Constructor and Description |
---|
SaturatedSingleSplitDistribution(int numberOfBaseTransitionCategories) |
SaturatedSingleSplitDistribution(int numberOfBaseTransitionCategories,
double[] initialParameters) |
Modifier and Type | Method and Description |
---|---|
void |
getDefaultValues(double[] store,
int startIndex)
get default value parameter values
|
double[] |
getDistribution() |
double[][] |
getDistributionInfo()
Obtain the distribution information stored in the following format: [beforeclass][afterclass]
For example, the probability of evolving in class 0 before the split, and class 1 after the split - [0][1]
|
double |
getLowerLimit(int n)
get lower parameter limit
|
int |
getNumberOfBaseTransitionCategories() |
int |
getNumberOfParameters()
get number of parameters
|
void |
getParameters(double[] store,
int startIndex)
get model parameter
|
double |
getUpperLimit(int n)
get upper parameter limit
|
void |
setParameters(double[] store,
int startIndex)
set model parameter
|
java.lang.String |
toString() |
public SaturatedSingleSplitDistribution(int numberOfBaseTransitionCategories)
public SaturatedSingleSplitDistribution(int numberOfBaseTransitionCategories, double[] initialParameters)
public double[] getDistribution()
public int getNumberOfBaseTransitionCategories()
getNumberOfBaseTransitionCategories
in interface SingleSplitDistribution
public double[][] getDistributionInfo()
SingleSplitDistribution
getDistributionInfo
in interface SingleSplitDistribution
public int getNumberOfParameters()
NeoParameterized
getNumberOfParameters
in interface NeoParameterized
public void setParameters(double[] store, int startIndex)
NeoParameterized
setParameters
in interface NeoParameterized
store
- the array holding the parametersstartIndex
- the index into the array that the related parameters start atpublic void getParameters(double[] store, int startIndex)
NeoParameterized
getParameters
in interface NeoParameterized
startIndex
- the index into the array that the related parameters start atpublic double getLowerLimit(int n)
NeoParameterized
getLowerLimit
in interface NeoParameterized
n
- parameter numberpublic double getUpperLimit(int n)
NeoParameterized
getUpperLimit
in interface NeoParameterized
n
- parameter numberpublic void getDefaultValues(double[] store, int startIndex)
NeoParameterized
getDefaultValues
in interface NeoParameterized
public java.lang.String toString()
toString
in class java.lang.Object