All Methods Instance Methods Concrete Methods
Modifier and Type |
Method and Description |
void |
addGroupLeader(GroupLeader gl) |
ConstraintModel.GroupManager |
getRelatedGroup() |
boolean |
isOptimisable() |
boolean |
isPrimaryOptimisable() |
boolean |
isSameGroup(ConstraintModel.GroupManager queryGroup) |
boolean |
isSecondarOptimisable() |
MolecularClockLikelihoodModel.External |
obtainConstrainedExternalCalculator() |
double |
optimiseAllGlobalClockConstraints(MultivariateMinimum minimiser,
GeneralConstraintGroupManager.LikelihoodScoreAccess scoreAccess,
int fxFracDigits,
int xFracDigits,
MinimiserMonitor rateMonitor)
Optimise all the global clock parameters related to this group
|
double |
optimisePrimaryGlobalClockConstraints(MultivariateMinimum minimiser,
GeneralConstraintGroupManager.LikelihoodScoreAccess scoreAccess,
int fxFracDigits,
int xFracDigits,
MinimiserMonitor rateMonitor)
Optimise the global clock parameters marked as primary related to this group
|
double |
optimiseSecondaryGlobalClockConstraints(MultivariateMinimum minimiser,
GeneralConstraintGroupManager.LikelihoodScoreAccess scoreAccess,
int fxFracDigits,
int xFracDigits,
MinimiserMonitor rateMonitor)
Optimise the global clock parameters marked as secondary related to this group
|
void |
setup() |