Package | Description |
---|---|
pal.eval |
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
|
Modifier and Type | Class and Description |
---|---|
class |
SimpleLeafCalculator |
Modifier and Type | Method and Description |
---|---|
LHCalculator.Leaf |
LHCalculator.Generator.createNewLeaf(int[] patternStateMatchup,
int numberOfPatterns)
Create anew leaf calculator
|
LHCalculator.Leaf |
LHCalculator.Generator.createNewLeaf(int[] patternStateMatchup,
int numberOfPatterns,
LHCalculator.Generator parentGenerator) |
LHCalculator.Leaf |
LHCalculator.Leaf.getCopy()
Create a new Leaf calculator that has exactly the same properties as this one (but is different such that it may be used independently)
|
LHCalculator.Leaf |
SimpleLeafCalculator.getCopy() |
Constructor and Description |
---|
LeafImpl(LHCalculator.Leaf base,
SubstitutionModel model) |