See: Description
Interface | Description |
---|---|
DistanceMatrixAccess | |
DistanceMatrixGenerator |
Class | Description |
---|---|
AlignmentDistanceMatrix |
compute distance matrix (observed and ML) from alignment (SitePattern)
|
DistanceMatrix |
storage for pairwise distance matrices.
|
DistanceMatrixAccess.Utils | |
DistanceMatrixGenerator.Utils | |
DistanceMatrixUtils |
Auxillary functions for distance matrices
|
DistanceTool | |
JukesCantorDistanceMatrix |
compute jukes-cantor corrected distance matrix
|
PairwiseDistance |
determines the (observed and ML) distance between a pair of sequences
|
ReadDistanceMatrix |
reads pairwise distance matrices in PHYLIP format
(full matrix)
|
SequencePairLikelihood |
computation of the (negative) log-likelihood for a pair of sequences
|
Exception | Description |
---|---|
DistanceParseException |
exception thrown by ReadDistanceMatrix
|