public class GenotypeConcordanceContingencyMetrics extends MetricBase
Modifier and Type | Field and Description |
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String |
CALL_SAMPLE
The name of the 'call' sample
|
int |
EMPTY_COUNT
The empty (no contingency info) count across all variants
|
int |
FN_COUNT
The FN (false negative) count across all variants
|
int |
FP_COUNT
The FP (false positive) count across all variants
|
int |
TN_COUNT
The TN (true negative) count across all variants
|
int |
TP_COUNT
The TP (true positive) count across all variants
|
String |
TRUTH_SAMPLE
The name of the 'truth' sample
|
VariantContext.Type |
VARIANT_TYPE
The type of the event (i.e.
|
Constructor and Description |
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GenotypeConcordanceContingencyMetrics()
Empty constructor - needed for unit tests
|
public VariantContext.Type VARIANT_TYPE
public String TRUTH_SAMPLE
public String CALL_SAMPLE
public int TP_COUNT
public int TN_COUNT
public int FP_COUNT
public int FN_COUNT
public int EMPTY_COUNT