public class GcBiasSummaryMetrics extends MultilevelMetrics
Modifier and Type | Field and Description |
---|---|
String |
ACCUMULATION_LEVEL |
int |
ALIGNED_READS
The total number of aligned reads used to compute the gc bias metrics.
|
double |
AT_DROPOUT
Illumina-style AT dropout metric.
|
double |
GC_DROPOUT
Illumina-style GC dropout metric.
|
int |
TOTAL_CLUSTERS
The total number of clusters that were seen in the gc bias calculation.
|
int |
WINDOW_SIZE
The window size on the genome used to calculate the GC of the sequence.
|
LIBRARY, READ_GROUP, SAMPLE
Constructor and Description |
---|
GcBiasSummaryMetrics() |
public String ACCUMULATION_LEVEL
public int WINDOW_SIZE
public int TOTAL_CLUSTERS
public int ALIGNED_READS
public double AT_DROPOUT
public double GC_DROPOUT