Package | Description |
---|---|
picard.analysis | |
picard.analysis.directed | |
picard.metrics |
Modifier and Type | Method and Description |
---|---|
protected PerUnitMetricCollector<AlignmentSummaryMetrics,Comparable<?>,SAMRecordAndReference> |
AlignmentSummaryMetricsCollector.makeChildCollector(String sample,
String library,
String readGroup) |
protected PerUnitMetricCollector<picard.analysis.RrbsMetrics,Comparable<?>,SAMRecordAndReference> |
RrbsMetricsCollector.makeChildCollector(String sample,
String library,
String readGroup) |
Modifier and Type | Class and Description |
---|---|
class |
GcBiasMetricsCollector.PerUnitGcBiasMetricsCollector |
class |
InsertSizeMetricsCollector.PerUnitInsertSizeMetricsCollector
A Collector for individual InsertSizeMetrics for a given SAMPLE or SAMPLE/LIBRARY or SAMPLE/LIBRARY/READ_GROUP (depending on aggregation levels)
|
class |
TargetMetricsCollector.PerUnitTargetMetricCollector
Collect the Target Metrics for one unit of "accumulation" (i.e.
|
Modifier and Type | Method and Description |
---|---|
protected PerUnitMetricCollector<METRIC_TYPE,Integer,SAMRecord> |
TargetMetricsCollector.makeAllReadCollector() |
protected PerUnitMetricCollector<GcBiasMetrics,Integer,picard.analysis.directed.GcBiasCollectorArgs> |
GcBiasMetricsCollector.makeChildCollector(String sample,
String library,
String readGroup) |
protected PerUnitMetricCollector<InsertSizeMetrics,Integer,picard.analysis.directed.InsertSizeCollectorArgs> |
InsertSizeMetricsCollector.makeChildCollector(String sample,
String library,
String readGroup)
Make an InsertSizeCollector with the given arguments
|
protected PerUnitMetricCollector<RnaSeqMetrics,Integer,SAMRecord> |
RnaSeqMetricsCollector.makeChildCollector(String sample,
String library,
String readGroup) |
protected PerUnitMetricCollector<METRIC_TYPE,Integer,SAMRecord> |
TargetMetricsCollector.makeChildCollector(String sample,
String library,
String readGroup) |