public class ClocsFileReader extends AbstractIlluminaPositionFileReader
AbstractIlluminaPositionFileReader.PositionInfo
MAX_POS, MIN_POS
Constructor and Description |
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ClocsFileReader(File clocsFile) |
Modifier and Type | Method and Description |
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void |
close() |
boolean |
hasNext()
Return true if the file has more elements to return, false otherwise
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protected String |
makeExceptionMsg()
Create a string that will be included in any NoSuchElementException thrown by the next() method
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protected AbstractIlluminaPositionFileReader.PositionInfo |
unsafeNextInfo()
Grab the next set of offset values, decompress them.
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public ClocsFileReader(File clocsFile)
protected AbstractIlluminaPositionFileReader.PositionInfo unsafeNextInfo()
unsafeNextInfo
in class AbstractIlluminaPositionFileReader
protected String makeExceptionMsg()
AbstractIlluminaPositionFileReader
makeExceptionMsg
in class AbstractIlluminaPositionFileReader
public boolean hasNext()
AbstractIlluminaPositionFileReader
hasNext
in interface Iterator<AbstractIlluminaPositionFileReader.PositionInfo>
hasNext
in class AbstractIlluminaPositionFileReader
public void close()