Package | Description |
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picard.analysis.directed | |
picard.annotation |
Constructor and Description |
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RnaSeqMetricsCollector(Set<MetricAccumulationLevel> accumulationLevels,
List<SAMReadGroupRecord> samRgRecords,
Long ribosomalBasesInitialValue,
OverlapDetector<Gene> geneOverlapDetector,
OverlapDetector<Interval> ribosomalSequenceOverlapDetector,
HashSet<Integer> ignoredSequenceIndices,
int minimumLength,
RnaSeqMetricsCollector.StrandSpecificity strandSpecificity,
double rrnaFragmentPercentage,
boolean collectCoverageStatistics) |
Modifier and Type | Method and Description |
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Gene |
Gene.Transcript.getGene() |
Modifier and Type | Method and Description |
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static OverlapDetector<Gene> |
GeneAnnotationReader.loadRefFlat(File refFlatFile,
SAMSequenceDictionary sequenceDictionary) |
Modifier and Type | Method and Description |
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int |
Gene.compareTo(Gene that) |