libSBML Perl API
libSBML 5.13.0 Perl API
- c -
canonicalize() :
ASTNode
changeErrorSeverity() :
XMLErrorLog
checkCompatibility() :
CobraToFbcConverter
checkConsistency() :
SBMLDocument
,
SBMLInternalValidator
checkConsistencyWithStrictUnits() :
SBMLDocument
checkInternalConsistency() :
SBMLDocument
,
SBMLInternalValidator
checkL1Compatibility() :
SBMLDocument
,
SBMLInternalValidator
checkL2v1Compatibility() :
SBMLDocument
,
SBMLInternalValidator
checkL2v2Compatibility() :
SBMLDocument
,
SBMLInternalValidator
checkL2v3Compatibility() :
SBMLDocument
,
SBMLInternalValidator
checkL2v4Compatibility() :
SBMLDocument
,
SBMLInternalValidator
checkL3v1Compatibility() :
SBMLDocument
,
SBMLInternalValidator
checkTerm() :
SBO
clear() :
ListOf
,
XMLAttributes
,
XMLNamespaces
clearAdditionalDirs() :
SBMLFileResolver
clearAssociations() :
Association
clearAttributes() :
XMLToken
clearFailures() :
SBMLValidator
,
Validator
clearInstantiation() :
Submodel
clearLog() :
XMLErrorLog
clearNamespaces() :
XMLToken
clearReferencedElement() :
SBaseRef
clearReplacedElements() :
CompSBasePlugin
clone() :
AlgebraicRule
,
AssignmentRule
,
Association
,
BoundingBox
,
CobraToFbcConverter
,
Compartment
,
CompartmentGlyph
,
CompartmentType
,
CompExtension
,
CompFlatteningConverter
,
CompModelPlugin
,
CompSBasePlugin
,
CompSBMLDocumentPlugin
,
Constraint
,
ConversionOption
,
ConversionProperties
,
CubicBezier
,
Curve
,
CVTerm
,
Date
,
DefaultTerm
,
Delay
,
Deletion
,
Dimensions
,
Event
,
EventAssignment
,
ExternalModelDefinition
,
FbcAnd
,
FbcAssociation
,
FbcExtension
,
FbcModelPlugin
,
FbcOr
,
FbcReactionPlugin
,
FbcSBMLDocumentPlugin
,
FbcSpeciesPlugin
,
FbcToCobraConverter
,
FbcV1ToV2Converter
,
FbcV2ToV1Converter
,
FluxBound
,
FluxObjective
,
FunctionDefinition
,
FunctionTerm
,
GeneAssociation
,
GeneProduct
,
GeneProductAssociation
,
GeneProductRef
,
GeneralGlyph
,
GraphicalObject
,
Group
,
GroupsExtension
,
GroupsModelPlugin
,
GroupsSBMLDocumentPlugin
,
InitialAssignment
,
Input
,
KineticLaw
,
Layout
,
LayoutExtension
,
LayoutModelPlugin
,
LayoutSBMLDocumentPlugin
,
LayoutSpeciesReferencePlugin
,
LineSegment
,
ListOf
,
ListOfCompartmentGlyphs
,
ListOfCompartments
,
ListOfCompartmentTypes
,
ListOfConstraints
,
ListOfDeletions
,
ListOfEventAssignments
,
ListOfEvents
,
ListOfExternalModelDefinitions
,
ListOfFbcAssociations
,
ListOfFluxBounds
,
ListOfFluxObjectives
,
ListOfFunctionDefinitions
,
ListOfFunctionTerms
,
ListOfGeneAssociations
,
ListOfGeneProducts
,
ListOfGraphicalObjects
,
ListOfGroups
,
ListOfInitialAssignments
,
ListOfInputs
,
ListOfLayouts
,
ListOfLineSegments
,
ListOfLocalParameters
,
ListOfMembers
,
ListOfModelDefinitions
,
ListOfObjectives
,
ListOfOutputs
,
ListOfParameters
,
ListOfPorts
,
ListOfQualitativeSpecies
,
ListOfReactionGlyphs
,
ListOfReactions
,
ListOfReferenceGlyphs
,
ListOfReplacedElements
,
ListOfRules
,
ListOfSpecies
,
ListOfSpeciesGlyphs
,
ListOfSpeciesReferenceGlyphs
,
ListOfSpeciesReferences
,
ListOfSpeciesTypes
,
ListOfSubmodels
,
ListOfTextGlyphs
,
ListOfTransitions
,
ListOfUnitDefinitions
,
ListOfUnits
,
LocalParameter
,
Member
,
Model
,
ModelCreator
,
ModelDefinition
,
ModelHistory
,
ModifierSpeciesReference
,
Objective
,
Output
,
Parameter
,
Point
,
Port
,
Priority
,
QualExtension
,
QualitativeSpecies
,
QualModelPlugin
,
QualSBMLDocumentPlugin
,
RateRule
,
Reaction
,
ReactionGlyph
,
ReferenceGlyph
,
ReplacedBy
,
ReplacedElement
,
Rule
,
SBase
,
SBaseExtensionPoint
,
SBasePlugin
,
SBasePluginCreator< SBasePluginType, SBMLExtensionType >
,
SBasePluginCreatorBase
,
SBaseRef
,
SBMLConverter
,
SBMLDocument
,
SBMLDocumentPlugin
,
SBMLExtension
,
SBMLExtensionNamespaces< SBMLExtensionType >
,
SBMLFileResolver
,
SBMLFunctionDefinitionConverter
,
SBMLIdConverter
,
SBMLInferUnitsConverter
,
SBMLInitialAssignmentConverter
,
SBMLInternalValidator
,
SBMLLevel1Version1Converter
,
SBMLLevelVersionConverter
,
SBMLLocalParameterConverter
,
SBMLNamespaces
,
SBMLReactionConverter
,
SBMLResolver
,
SBMLRuleConverter
,
SBMLStripPackageConverter
,
SBMLUnitsConverter
,
SBMLUri
,
SBMLValidator
,
Species
,
SpeciesGlyph
,
SpeciesReference
,
SpeciesReferenceGlyph
,
SpeciesType
,
StoichiometryMath
,
Submodel
,
TextGlyph
,
Transition
,
Trigger
,
Unit
,
UnitDefinition
,
XMLAttributes
,
XMLNamespaces
,
XMLNode
,
XMLToken
,
XMLTriple
CobraToFbcConverter() :
CobraToFbcConverter
combine() :
UnitDefinition
Compartment() :
Compartment
CompartmentGlyph() :
CompartmentGlyph
CompartmentType() :
CompartmentType
CompExtension() :
CompExtension
CompFlatteningConverter() :
CompFlatteningConverter
CompModelPlugin() :
CompModelPlugin
CompSBasePlugin() :
CompSBasePlugin
CompSBMLDocumentPlugin() :
CompSBMLDocumentPlugin
CompValidator() :
CompValidator
Constraint() :
Constraint
contains() :
SBMLErrorLog
containsChild() :
XMLInputStream
containsUndeclaredUnits() :
Delay
,
EventAssignment
,
InitialAssignment
,
KineticLaw
,
Rule
,
StoichiometryMath
containsUri() :
XMLNamespaces
ConversionOption() :
ConversionOption
ConversionProperties() :
ConversionProperties
convert() :
CobraToFbcConverter
,
CompFlatteningConverter
,
FbcToCobraConverter
,
FbcV1ToV2Converter
,
FbcV2ToV1Converter
,
SBMLConverter
,
SBMLDocument
,
SBMLFunctionDefinitionConverter
,
SBMLIdConverter
,
SBMLInferUnitsConverter
,
SBMLInitialAssignmentConverter
,
SBMLLevel1Version1Converter
,
SBMLLevelVersionConverter
,
SBMLLocalParameterConverter
,
SBMLReactionConverter
,
SBMLRuleConverter
,
SBMLStripPackageConverter
,
SBMLUnitsConverter
convertStringToXMLNode() :
XMLNode
convertTimeAndExtent() :
Submodel
convertToSI() :
Unit
,
UnitDefinition
convertXMLNodeToString() :
XMLNode
copyInformationToNestedLists() :
GroupsModelPlugin
countIf() :
List
createAdditionalGraphicalObject() :
Layout
createAlgebraicRule() :
Model
createAnd() :
Association
,
FbcAnd
,
FbcOr
,
GeneProductAssociation
,
ListOfFbcAssociations
createAnnotation() :
RDFAnnotationParser
createAssignmentRule() :
Model
createAssociation() :
GeneAssociation
createCompartment() :
Model
createCompartmentGlyph() :
Layout
createCompartmentType() :
Model
createConstraint() :
Model
createCubicBezier() :
Curve
,
GeneralGlyph
,
Layout
,
ReactionGlyph
,
ReferenceGlyph
,
SpeciesReferenceGlyph
createCVTerms() :
RDFAnnotationParser
createDefaultTerm() :
ListOfFunctionTerms
,
Transition
createDelay() :
Event
,
Model
createDeletion() :
Submodel
createEvent() :
Model
createEventAssignment() :
Event
,
Model
createExternalModelDefinition() :
CompSBMLDocumentPlugin
createFluxBound() :
FbcModelPlugin
createFluxObjective() :
ListOfFluxObjectives
,
Objective
createFunctionDefinition() :
Model
createFunctionTerm() :
Transition
createGene() :
Association
createGeneAssociation() :
FbcModelPlugin
createGeneProduct() :
FbcModelPlugin
,
ListOfGeneProducts
createGeneProductAssociation() :
FbcReactionPlugin
createGeneProductRef() :
FbcAnd
,
FbcOr
,
GeneProductAssociation
,
ListOfFbcAssociations
createGeneralGlyph() :
Layout
createGroup() :
GroupsModelPlugin
,
ListOfGroups
createInitialAssignment() :
Model
createInput() :
Transition
createKineticLaw() :
Model
,
Reaction
createKineticLawLocalParameter() :
Model
createKineticLawParameter() :
Model
createLayout() :
LayoutModelPlugin
createLineSegment() :
Curve
,
GeneralGlyph
,
Layout
,
ReactionGlyph
,
ReferenceGlyph
,
SpeciesReferenceGlyph
createLocalParameter() :
KineticLaw
createMember() :
Group
,
ListOfMembers
createModel() :
SBMLDocument
createModelDefinition() :
CompSBMLDocumentPlugin
createModifier() :
Model
,
Reaction
createObjective() :
FbcModelPlugin
,
ListOfObjectives
createOr() :
Association
,
FbcAnd
,
FbcOr
,
GeneProductAssociation
,
ListOfFbcAssociations
createOutput() :
Transition
createParameter() :
KineticLaw
,
Model
createPlugin() :
SBasePluginCreator< SBasePluginType, SBMLExtensionType >
,
SBasePluginCreatorBase
createPort() :
CompModelPlugin
createPriority() :
Event
createProduct() :
Model
,
Reaction
createQualitativeSpecies() :
QualModelPlugin
createRateRule() :
Model
createRDFAnnotation() :
RDFAnnotationParser
createRDFDescription() :
RDFAnnotationParser
createReactant() :
Model
,
Reaction
createReaction() :
Model
createReactionGlyph() :
Layout
createReferenceGlyph() :
GeneralGlyph
createReplacedBy() :
CompSBasePlugin
createReplacedElement() :
CompSBasePlugin
createSBaseRef() :
SBaseRef
createSpecies() :
Model
createSpeciesGlyph() :
Layout
createSpeciesReferenceGlyph() :
Layout
,
ReactionGlyph
createSpeciesType() :
Model
createStoichiometryMath() :
SpeciesReference
createSubmodel() :
CompModelPlugin
createTextGlyph() :
Layout
createTransition() :
QualModelPlugin
createTrigger() :
Event
,
Model
createUnit() :
Model
,
UnitDefinition
createUnitDefinition() :
Model
CubicBezier() :
CubicBezier
Curve() :
Curve
CVTerm() :
CVTerm
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